Wall clock time and date at job start Mon Mar 30 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 112.91237 * 2 1 4 4 C 1.53783 * 113.61368 * 228.74627 * 2 1 3 5 5 C 1.53783 * 87.08073 * 270.88432 * 4 2 1 6 6 C 1.53774 * 87.08151 * 334.56632 * 5 4 2 7 7 H 1.09000 * 113.69336 * 270.87159 * 6 5 4 8 8 N 1.46901 * 113.61448 * 139.97977 * 6 5 4 9 9 C 1.46905 * 110.99870 * 107.50193 * 8 6 5 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47360 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47360 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47393 * 180.02562 * 12 11 10 14 14 H 1.08010 * 119.99765 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00736 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99566 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00463 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47101 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46859 * 120.00133 * 17 15 13 20 20 H 1.48499 * 109.47506 * 240.00180 * 17 15 13 21 21 H 1.09004 * 109.47112 * 288.75106 * 1 2 3 22 22 H 1.09001 * 109.47251 * 48.74999 * 1 2 3 23 23 H 1.08998 * 109.47224 * 168.74898 * 1 2 3 24 24 H 1.09001 * 113.61235 * 25.43501 * 4 2 1 25 25 H 1.09007 * 113.61463 * 156.25269 * 4 2 1 26 26 H 1.09002 * 113.61087 * 220.01700 * 5 4 2 27 27 H 1.09003 * 113.61375 * 89.11830 * 5 4 2 28 28 H 1.00901 * 111.00067 * 231.45369 * 8 6 5 29 29 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 30 30 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 31 31 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 32 32 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 33 33 H 1.09001 * 109.46514 * 300.00105 * 11 10 9 34 34 H 1.08998 * 109.46924 * 59.99625 * 11 10 9 35 35 H 1.09001 * 109.47393 * 299.99567 * 12 11 10 36 36 H 1.08998 * 109.47408 * 59.99921 * 12 11 10 37 37 H 0.97002 * 119.99740 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1459 -0.9291 -1.0593 5 6 2.0928 -2.0426 0.0001 6 6 2.1460 -0.9291 1.0593 7 1 3.1585 -0.6490 1.3500 8 7 1.2679 -1.1710 2.2119 9 6 2.0495 -1.5285 3.4033 10 6 1.1027 -1.7729 4.5800 11 6 1.9168 -2.1447 5.8210 12 6 0.9700 -2.3885 6.9978 13 6 1.7718 -2.7540 8.2203 14 1 2.8491 -2.8075 8.1634 15 6 1.1305 -3.0201 9.4114 16 7 -0.1813 -2.9554 9.4805 17 14 2.1244 -3.4739 10.9265 18 1 3.5701 -3.4778 10.5872 19 1 1.8711 -2.4799 12.0005 20 1 1.7221 -4.8238 11.3965 21 1 -0.3633 0.3304 0.9732 22 1 -0.3634 0.6776 -0.7726 23 1 -0.3633 -1.0079 -0.2005 24 1 1.4944 -1.1087 -1.9145 25 1 3.1585 -0.6491 -1.3500 26 1 2.9716 -2.6875 0.0000 27 1 1.1567 -2.6010 0.0001 28 1 0.6793 -0.3716 2.3922 29 1 2.6221 -2.4343 3.2038 30 1 2.7315 -0.7142 3.6482 31 1 0.5299 -0.8673 4.7796 32 1 0.4211 -2.5874 4.3348 33 1 2.4900 -3.0501 5.6216 34 1 2.5981 -1.3299 6.0660 35 1 0.3972 -1.4827 7.1970 36 1 0.2884 -3.2030 6.7531 37 1 -0.6326 -3.1423 10.3186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385305381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:52 Heat of formation + Delta-G solvation = -29.794042 kcal Electronic energy + Delta-G solvation = -13640.655461 eV Core-core repulsion = 11416.476480 eV Total energy + Delta-G solvation = -2224.178981 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39982 -37.18596 -35.29707 -33.44580 -30.23572 -29.85735 -26.53777 -24.60952 -24.42657 -22.80853 -21.79085 -19.26532 -18.42105 -17.14847 -16.87697 -16.49651 -16.12816 -15.66882 -14.66233 -14.51455 -13.95716 -13.69972 -13.40039 -13.24826 -13.14548 -13.06706 -12.85855 -12.45395 -12.28496 -12.19927 -12.10435 -11.60673 -11.41977 -11.33797 -11.22145 -10.99629 -10.79215 -10.56384 -9.32339 -8.20353 -6.31978 1.39381 1.39996 1.53578 2.40739 3.12324 3.25027 3.61538 3.73866 4.00232 4.02741 4.12266 4.27999 4.51136 4.58668 4.59719 4.67682 4.77354 4.84009 4.88661 4.92400 5.01622 5.08732 5.14433 5.23474 5.26101 5.32782 5.36018 5.49501 5.54307 5.58742 5.77181 5.86345 6.20688 6.25562 6.49391 6.85623 7.37447 8.91820 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.082536 B = 0.004165 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.164875 B = 6720.563206 C = 6906.670914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 H 0.078 0.922 4 C -0.130 4.130 5 C -0.129 4.129 6 C 0.051 3.949 7 H 0.069 0.931 8 N -0.683 5.683 9 C 0.071 3.929 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.022 3.978 13 C -0.545 4.545 14 H 0.059 0.941 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.343 0.657 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.050 0.950 35 H -0.010 1.010 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 5.641 -19.559 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.133 4.133 3 H 0.097 0.903 4 C -0.167 4.167 5 C -0.168 4.168 6 C -0.059 4.059 7 H 0.087 0.913 8 N -0.315 5.315 9 C -0.059 4.059 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.203 1.203 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.283 4.974 -19.617 20.686 hybrid contribution 0.478 0.492 1.386 1.547 sum 4.761 5.466 -18.231 19.619 Atomic orbital electron populations 1.21462 0.93167 1.02076 1.01790 1.22632 0.96742 0.98126 0.95841 0.90323 1.22816 1.01508 0.95899 0.96509 1.23009 1.01857 0.96560 0.95326 1.23208 0.95315 0.97766 0.89595 0.91318 1.60676 1.22978 1.43264 1.04572 1.21885 0.94857 0.99849 0.89279 1.21461 0.98114 1.00988 0.93715 1.21400 0.97956 0.99971 0.94190 1.19033 0.94634 0.94608 0.93248 1.21774 0.93825 1.46640 0.96041 0.92232 1.26032 0.96052 0.95334 1.02652 1.70116 1.09371 1.50602 1.27404 0.85365 0.79056 0.77919 0.78494 1.18561 1.20236 1.20270 0.92599 0.91536 0.92694 0.90445 0.89355 0.92066 0.90364 0.83707 0.91536 0.95112 0.92866 0.92723 0.93190 0.93156 0.99150 0.99252 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.98 71.98 0.65 -1.46 16 2 C -0.11 -1.91 4.43 -10.27 -0.05 -1.95 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.13 -1.95 7.64 31.12 0.24 -1.71 16 5 C -0.13 -2.49 7.53 31.12 0.23 -2.26 16 6 C 0.05 1.06 4.03 45.44 0.18 1.24 16 7 H 0.07 1.44 7.87 -2.39 -0.02 1.42 16 8 N -0.68 -16.99 6.07 -488.86 -2.97 -19.95 16 9 C 0.07 2.01 5.53 86.30 0.48 2.49 16 10 C -0.10 -3.69 5.47 30.59 0.17 -3.52 16 11 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16 12 C 0.02 1.20 4.97 29.85 0.15 1.35 16 13 C -0.54 -32.09 9.11 25.60 0.23 -31.85 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 17 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H 0.06 0.97 6.72 -2.38 -0.02 0.96 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 1.00 7.34 -2.39 -0.02 0.98 16 24 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 25 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.68 7.65 -2.39 -0.02 1.66 16 28 H 0.34 8.07 6.93 -89.69 -0.62 7.45 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 0.85 8.13 -2.39 -0.02 0.83 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -64.25 296.88 2.63 -61.62 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.38 Total: 10.59 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 2.90 Total: -41.39 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -2.68 Total: -77.98 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.25 2.63 -61.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.822 kcal (2) G-P(sol) polarization free energy of solvation -64.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds