Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 112.90899 * 2 1 4 4 C 1.53779 * 113.61524 * 131.26251 * 2 1 3 5 5 C 1.53775 * 87.08500 * 139.97683 * 4 2 1 6 6 C 1.53784 * 87.07990 * 334.56431 * 5 4 2 7 7 H 1.08997 * 113.61512 * 270.79746 * 6 5 4 8 8 N 1.46906 * 113.61355 * 139.98033 * 6 5 4 9 9 C 1.46901 * 110.99793 * 104.50806 * 8 6 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08009 * 120.00339 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00310 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00473 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47112 * 60.00220 * 17 15 13 19 19 H 1.48500 * 109.47454 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47261 * 300.00048 * 17 15 13 21 21 H 1.09001 * 109.47196 * 191.24992 * 1 2 3 22 22 H 1.09007 * 109.46829 * 311.24293 * 1 2 3 23 23 H 1.08999 * 109.47514 * 71.24635 * 1 2 3 24 24 H 1.09004 * 113.61833 * 25.42432 * 4 2 1 25 25 H 1.08998 * 113.68953 * 254.53911 * 4 2 1 26 26 H 1.08999 * 113.61978 * 220.01970 * 5 4 2 27 27 H 1.08997 * 113.69493 * 89.11980 * 5 4 2 28 28 H 1.00898 * 110.99995 * 228.45883 * 8 6 5 29 29 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 30 30 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 31 31 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 32 32 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 33 33 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 34 34 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 35 35 H 1.08992 * 109.47098 * 299.99158 * 12 11 10 36 36 H 1.09001 * 109.47583 * 60.00267 * 12 11 10 37 37 H 0.96998 * 120.00187 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1460 -0.9293 1.0591 5 6 3.1923 -1.3137 -0.0002 6 6 2.1459 -0.9290 -1.0595 7 1 1.4953 -1.7538 -1.3503 8 7 2.7106 -0.2143 -2.2121 9 6 2.8013 -1.0947 -3.3845 10 6 3.3932 -0.3169 -4.5617 11 6 3.4871 -1.2337 -5.7830 12 6 4.0795 -0.4560 -6.9600 13 6 4.1726 -1.3592 -8.1628 14 1 3.8419 -2.3851 -8.0947 15 6 4.6790 -0.8756 -9.3505 16 7 5.0803 0.3741 -9.4339 17 14 4.7937 -1.9948 -10.8416 18 1 3.4374 -2.4807 -11.2014 19 1 5.3688 -1.2402 -11.9840 20 1 5.6667 -3.1536 -10.5248 21 1 -0.3633 -1.0079 0.2005 22 1 -0.3633 0.6775 0.7728 23 1 -0.3634 0.3304 -0.9731 24 1 1.4945 -1.7538 1.3488 25 1 2.5653 -0.4004 1.9151 26 1 3.4443 -2.3742 -0.0004 27 1 4.0717 -0.6697 -0.0012 28 1 2.1739 0.6138 -2.4224 29 1 1.8060 -1.4522 -3.6484 30 1 3.4428 -1.9447 -3.1518 31 1 2.7520 0.5333 -4.7945 32 1 4.3885 0.0402 -4.2976 33 1 4.1280 -2.0841 -5.5505 34 1 2.4915 -1.5905 -6.0470 35 1 3.4390 0.3945 -7.1927 36 1 5.0752 -0.0997 -6.6958 37 1 5.4369 0.7142 -10.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385305386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = -15.347109 kcal Electronic energy + Delta-G solvation = -13553.340420 eV Core-core repulsion = 11329.787905 eV Total energy + Delta-G solvation = -2223.552515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.41128 -35.73559 -33.49438 -31.69758 -29.94430 -28.12144 -24.88566 -23.54412 -22.77202 -21.26878 -20.07469 -19.33306 -16.32230 -16.00075 -15.27132 -14.89524 -14.46907 -14.26712 -13.60724 -13.29022 -13.17020 -12.64128 -12.24345 -11.80219 -11.74194 -11.68878 -11.28167 -11.04059 -10.91397 -10.61378 -10.49633 -10.40546 -10.31407 -10.17909 -9.58857 -9.20786 -8.96574 -8.33066 -8.29075 -5.94866 -3.97122 3.36108 3.40147 3.42826 4.24624 4.39744 4.49259 4.50349 4.80573 4.82527 5.22648 5.34731 5.40263 5.43028 5.47134 5.54968 5.60125 5.69089 5.74070 5.90433 5.95666 5.96316 6.16724 6.20218 6.27257 6.40133 6.56717 6.87382 7.01501 7.14292 7.30549 7.48686 7.74057 7.90634 8.06406 8.49212 9.10210 9.66483 11.16492 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.078716 B = 0.004047 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.625376 B = 6917.577505 C = 6958.431359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.138 4.138 5 C -0.128 4.128 6 C 0.061 3.939 7 H 0.068 0.932 8 N -0.680 5.680 9 C 0.059 3.941 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.339 0.661 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 -1.486 18.793 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 H 0.114 0.886 4 C -0.176 4.176 5 C -0.167 4.167 6 C -0.049 4.049 7 H 0.086 0.914 8 N -0.310 5.310 9 C -0.070 4.070 10 C -0.154 4.154 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.157 0.843 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.607 -1.465 18.847 20.025 hybrid contribution -0.840 -0.636 -1.211 1.605 sum -7.446 -2.102 17.636 19.259 Atomic orbital electron populations 1.21766 0.95098 1.01665 1.01682 1.22809 0.95154 0.99160 0.96430 0.88641 1.22843 0.98708 0.99280 0.96781 1.22985 0.97648 1.01143 0.94876 1.23134 0.95500 0.96285 0.89957 0.91418 1.60682 1.55931 1.08835 1.05600 1.22113 0.98897 0.96061 0.89919 1.21639 1.01051 0.98630 0.94034 1.21591 1.00080 0.98106 0.94940 1.19091 0.95946 0.95253 0.91326 1.21264 1.41339 0.97485 0.95814 0.92838 1.25035 0.95573 0.95057 0.98865 1.69962 1.42856 1.14299 1.26485 0.86666 0.78317 0.80725 0.82331 1.20293 1.21300 1.20260 0.92728 0.92594 0.92648 0.90431 0.91423 0.91995 0.89329 0.84256 0.95699 0.91385 0.92822 0.91691 0.93472 0.93729 0.96742 0.96599 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.71 37.16 0.36 -0.83 16 2 C -0.12 -1.08 3.96 -89.81 -0.36 -1.43 16 3 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -1.19 7.63 -25.92 -0.20 -1.39 16 5 C -0.13 -1.33 7.88 -25.92 -0.20 -1.53 16 6 C 0.06 0.68 3.67 -66.89 -0.25 0.44 16 7 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 8 N -0.68 -8.88 6.55 -105.86 -0.69 -9.58 16 9 C 0.06 0.88 5.55 -3.82 -0.02 0.85 16 10 C -0.12 -2.05 5.47 -26.73 -0.15 -2.19 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H 0.05 0.43 7.94 -51.93 -0.41 0.02 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.61 7.96 -51.93 -0.41 0.20 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.34 4.17 8.58 -39.29 -0.34 3.83 16 29 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 301.62 15.07 4.55 4.55 Total: -1.00 -30.19 301.62 -8.96 -39.15 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.03 Total: -2.20 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -1.50 Total: -22.12 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.04 Total: -36.44 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.19 -8.96 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.804 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds