Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 112.90899 * 2 1 4 4 C 1.53779 * 113.61524 * 131.26251 * 2 1 3 5 5 C 1.53775 * 87.08500 * 139.97683 * 4 2 1 6 6 C 1.53784 * 87.07990 * 334.56431 * 5 4 2 7 7 H 1.08997 * 113.61512 * 270.79746 * 6 5 4 8 8 N 1.46906 * 113.61355 * 139.98033 * 6 5 4 9 9 C 1.46901 * 110.99793 * 104.50806 * 8 6 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08009 * 120.00339 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00310 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00473 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47112 * 60.00220 * 17 15 13 19 19 H 1.48500 * 109.47454 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47261 * 300.00048 * 17 15 13 21 21 H 1.09001 * 109.47196 * 191.24992 * 1 2 3 22 22 H 1.09007 * 109.46829 * 311.24293 * 1 2 3 23 23 H 1.08999 * 109.47514 * 71.24635 * 1 2 3 24 24 H 1.09004 * 113.61833 * 25.42432 * 4 2 1 25 25 H 1.08998 * 113.68953 * 254.53911 * 4 2 1 26 26 H 1.08999 * 113.61978 * 220.01970 * 5 4 2 27 27 H 1.08997 * 113.69493 * 89.11980 * 5 4 2 28 28 H 1.00898 * 110.99995 * 228.45883 * 8 6 5 29 29 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 30 30 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 31 31 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 32 32 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 33 33 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 34 34 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 35 35 H 1.08992 * 109.47098 * 299.99158 * 12 11 10 36 36 H 1.09001 * 109.47583 * 60.00267 * 12 11 10 37 37 H 0.96998 * 120.00187 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1460 -0.9293 1.0591 5 6 3.1923 -1.3137 -0.0002 6 6 2.1459 -0.9290 -1.0595 7 1 1.4953 -1.7538 -1.3503 8 7 2.7106 -0.2143 -2.2121 9 6 2.8013 -1.0947 -3.3845 10 6 3.3932 -0.3169 -4.5617 11 6 3.4871 -1.2337 -5.7830 12 6 4.0795 -0.4560 -6.9600 13 6 4.1726 -1.3592 -8.1628 14 1 3.8419 -2.3851 -8.0947 15 6 4.6790 -0.8756 -9.3505 16 7 5.0803 0.3741 -9.4339 17 14 4.7937 -1.9948 -10.8416 18 1 3.4374 -2.4807 -11.2014 19 1 5.3688 -1.2402 -11.9840 20 1 5.6667 -3.1536 -10.5248 21 1 -0.3633 -1.0079 0.2005 22 1 -0.3633 0.6775 0.7728 23 1 -0.3634 0.3304 -0.9731 24 1 1.4945 -1.7538 1.3488 25 1 2.5653 -0.4004 1.9151 26 1 3.4443 -2.3742 -0.0004 27 1 4.0717 -0.6697 -0.0012 28 1 2.1739 0.6138 -2.4224 29 1 1.8060 -1.4522 -3.6484 30 1 3.4428 -1.9447 -3.1518 31 1 2.7520 0.5333 -4.7945 32 1 4.3885 0.0402 -4.2976 33 1 4.1280 -2.0841 -5.5505 34 1 2.4915 -1.5905 -6.0470 35 1 3.4390 0.3945 -7.1927 36 1 5.0752 -0.0997 -6.6958 37 1 5.4369 0.7142 -10.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385305386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = -33.181240 kcal Electronic energy + Delta-G solvation = -13554.113766 eV Core-core repulsion = 11329.787905 eV Total energy + Delta-G solvation = -2224.325861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23406 -37.19620 -35.31558 -33.47917 -30.66598 -29.84011 -26.54375 -24.56745 -23.82858 -22.63644 -21.81460 -20.18996 -18.43393 -17.15805 -16.57671 -16.40898 -15.80133 -15.49485 -14.58519 -14.53567 -14.24386 -14.00445 -13.62285 -13.55170 -13.25195 -12.81756 -12.48030 -12.44306 -12.33805 -12.11858 -12.08173 -11.76160 -11.42133 -11.35293 -11.25153 -11.04123 -10.78619 -10.55261 -9.35476 -8.19959 -6.31864 1.39325 1.43024 1.51010 2.40939 3.12487 3.24725 3.61511 3.74772 3.99868 4.02547 4.12103 4.27795 4.50417 4.55260 4.58220 4.63801 4.73644 4.85392 4.88992 4.91107 4.99395 5.05754 5.14308 5.22373 5.25917 5.27838 5.34388 5.47943 5.53135 5.56530 5.77064 5.86210 6.20360 6.25433 6.47948 6.85368 7.37445 8.91814 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.078716 B = 0.004047 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.625376 B = 6917.577505 C = 6958.431359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.133 4.133 6 C 0.054 3.946 7 H 0.068 0.932 8 N -0.686 5.686 9 C 0.071 3.929 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.022 3.978 13 C -0.547 4.547 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.343 0.657 29 H 0.031 0.969 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.050 0.950 35 H -0.010 1.010 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -2.609 19.446 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.110 0.890 4 C -0.166 4.166 5 C -0.171 4.171 6 C -0.056 4.056 7 H 0.085 0.915 8 N -0.317 5.317 9 C -0.058 4.058 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.451 -2.593 19.522 21.056 hybrid contribution -0.563 -0.245 -1.392 1.522 sum -8.014 -2.838 18.130 20.025 Atomic orbital electron populations 1.21752 0.94179 1.02245 1.01812 1.22770 0.95861 0.98739 0.95645 0.88960 1.22817 0.97913 0.99370 0.96463 1.22994 0.97575 1.00996 0.95532 1.23271 0.96086 0.96778 0.89475 0.91452 1.60649 1.56724 1.08929 1.05392 1.21872 0.98823 0.95651 0.89428 1.21466 1.00821 0.98201 0.93824 1.21402 0.99805 0.98022 0.94294 1.19025 0.94321 0.94893 0.93229 1.21724 1.41667 0.98136 0.96989 0.92191 1.26036 0.94869 0.96696 1.02438 1.70102 1.43491 1.16324 1.27569 0.85470 0.78912 0.78611 0.77872 1.19064 1.20721 1.19119 0.92265 0.91523 0.93150 0.89335 0.90467 0.91914 0.90395 0.83834 0.95072 0.91539 0.92822 0.92740 0.93179 0.93122 0.99167 0.99278 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.71 71.98 0.70 -1.35 16 2 C -0.11 -1.85 3.96 -10.27 -0.04 -1.89 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.13 -1.92 7.63 31.12 0.24 -1.68 16 5 C -0.13 -2.57 7.88 31.12 0.25 -2.32 16 6 C 0.05 1.11 3.67 45.44 0.17 1.28 16 7 H 0.07 1.42 7.85 -2.39 -0.02 1.41 16 8 N -0.69 -17.22 6.55 -488.82 -3.20 -20.42 16 9 C 0.07 2.05 5.55 86.30 0.48 2.53 16 10 C -0.11 -3.71 5.47 30.59 0.17 -3.55 16 11 C -0.10 -4.14 5.15 30.59 0.16 -3.99 16 12 C 0.02 1.24 4.97 29.85 0.15 1.38 16 13 C -0.55 -32.25 9.11 25.60 0.23 -32.01 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 17 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H 0.06 0.80 7.94 -2.39 -0.02 0.78 16 22 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.09 1.16 7.96 -2.39 -0.02 1.14 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.34 8.09 8.58 -89.70 -0.77 7.32 16 29 H 0.03 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -64.32 301.62 2.30 -62.03 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.23 Total: 10.70 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 2.96 Total: -41.31 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.91 Total: -78.54 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.32 2.30 -62.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.845 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds