Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 112.84682 * 2 1 4 4 C 1.53778 * 113.61622 * 131.19704 * 2 1 3 5 5 C 1.54052 * 86.98384 * 89.16295 * 4 2 1 6 6 C 1.53777 * 113.61373 * 228.80735 * 2 1 3 7 7 H 1.08997 * 113.61512 * 156.25248 * 6 2 1 8 8 N 1.46896 * 113.61703 * 25.43008 * 6 2 1 9 9 C 1.46903 * 110.99962 * 155.00323 * 8 6 2 10 10 C 1.53001 * 109.47219 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47307 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47307 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47362 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99783 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00029 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47040 * 120.00045 * 17 15 13 20 20 H 1.48501 * 109.47116 * 239.99884 * 17 15 13 21 21 H 1.09001 * 109.47002 * 189.66377 * 1 2 3 22 22 H 1.08993 * 109.46955 * 309.66814 * 1 2 3 23 23 H 1.09000 * 109.47050 * 69.66643 * 1 2 3 24 24 H 1.08996 * 113.61691 * 203.66828 * 4 2 1 25 25 H 1.09001 * 113.61184 * 334.57099 * 4 2 1 26 26 H 1.09005 * 113.61368 * 270.88047 * 5 4 2 27 27 H 1.09006 * 113.61675 * 139.98387 * 5 4 2 28 28 H 1.00907 * 111.00000 * 278.95108 * 8 6 2 29 29 H 1.09007 * 109.46812 * 299.99782 * 9 8 6 30 30 H 1.09002 * 109.47565 * 59.99789 * 9 8 6 31 31 H 1.09000 * 109.47252 * 300.00013 * 10 9 8 32 32 H 1.09002 * 109.46951 * 59.99503 * 10 9 8 33 33 H 1.09000 * 109.47308 * 300.00386 * 11 10 9 34 34 H 1.09002 * 109.47189 * 60.00056 * 11 10 9 35 35 H 1.09000 * 109.47252 * 300.00420 * 12 11 10 36 36 H 1.09002 * 109.46951 * 59.99910 * 12 11 10 37 37 H 0.97000 * 119.99883 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1461 -0.9280 1.0602 5 6 2.0930 -2.0425 -0.0021 6 6 2.1460 -0.9280 -1.0603 7 1 3.1585 -0.6476 -1.3507 8 7 1.2680 -1.1688 -2.2131 9 6 2.0497 -1.5252 -3.4047 10 6 1.1029 -1.7686 -4.5817 11 6 1.9169 -2.1391 -5.8230 12 6 0.9701 -2.3831 -6.9998 13 6 1.7719 -2.7487 -8.2223 14 1 2.8490 -2.8021 -8.1655 15 6 1.1303 -3.0150 -9.4133 16 7 -0.1814 -2.9505 -9.4823 17 14 2.1242 -3.4688 -10.9284 18 1 3.5698 -3.4739 -10.5889 19 1 1.7219 -4.8189 -11.3982 20 1 1.8709 -2.4752 -12.0025 21 1 -0.3633 -1.0131 0.1725 22 1 -0.3633 0.6560 0.7910 23 1 -0.3633 0.3571 -0.9636 24 1 3.1591 -0.6485 1.3496 25 1 1.4946 -1.1068 1.9155 26 1 1.1570 -2.6010 -0.0026 27 1 2.9718 -2.6874 -0.0026 28 1 0.5834 -1.8799 -2.0038 29 1 2.7316 -0.7106 -3.6489 30 1 2.6223 -2.4312 -3.2062 31 1 0.4213 -2.5833 -4.3373 32 1 0.5299 -0.8629 -4.7804 33 1 2.5983 -1.3241 -6.0673 34 1 2.4902 -3.0447 -5.6246 35 1 0.2891 -3.1983 -6.7552 36 1 0.3965 -1.4778 -7.1984 37 1 -0.6328 -3.1382 -10.3201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385305392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = -13.256625 kcal Electronic energy + Delta-G solvation = -13640.624663 eV Core-core repulsion = 11417.162798 eV Total energy + Delta-G solvation = -2223.461865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.60454 -35.70892 -33.46703 -31.66933 -29.33978 -28.10923 -24.89085 -23.90743 -23.23379 -21.35774 -20.03869 -18.56551 -16.26320 -16.13482 -15.57860 -14.92692 -14.51030 -14.19656 -13.70317 -12.86176 -12.60181 -12.48459 -12.34935 -12.25962 -11.88283 -11.53055 -11.50094 -10.99508 -10.83203 -10.58217 -10.51582 -10.40517 -10.26902 -10.20206 -9.59608 -9.21125 -8.95195 -8.30857 -8.22421 -5.95562 -3.97607 3.33374 3.40558 3.45007 4.23052 4.45256 4.49816 4.53103 4.70121 4.85341 5.37395 5.40044 5.41306 5.45228 5.51071 5.54646 5.62307 5.72377 5.77857 5.94742 5.96049 6.05393 6.17540 6.25333 6.28415 6.41189 6.55771 6.87087 7.01083 7.13037 7.29460 7.49847 7.74206 7.90155 8.05924 8.48894 9.10212 9.66181 11.15863 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.082650 B = 0.004164 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.697156 B = 6722.036768 C = 6906.174655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.140 4.140 5 C -0.169 4.169 6 C 0.069 3.931 7 H 0.093 0.907 8 N -0.678 5.678 9 C 0.059 3.941 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.341 0.659 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 3.668 19.127 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.178 4.178 5 C -0.209 4.209 6 C -0.042 4.042 7 H 0.111 0.889 8 N -0.307 5.307 9 C -0.070 4.070 10 C -0.154 4.154 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.131 4.311 18.810 19.550 hybrid contribution 0.785 -1.226 -0.673 1.604 sum 3.917 3.085 18.137 18.810 Atomic orbital electron populations 1.21428 0.93542 1.01185 1.02225 1.22520 0.96583 0.98166 0.95024 0.90993 1.22876 1.00933 0.97165 0.96786 1.23688 1.01991 0.97233 0.97942 1.23058 0.96465 0.95742 0.88898 0.88914 1.60429 1.16492 1.50140 1.03670 1.22107 0.96072 0.98696 0.90117 1.21640 0.98073 1.01421 0.94244 1.21587 0.98793 0.99526 0.94796 1.19103 0.94355 0.96879 0.91355 1.21336 0.93299 1.46265 0.94842 0.92731 1.25038 0.94876 0.95705 0.98961 1.69981 1.07475 1.49892 1.26231 0.86556 0.80385 0.78035 0.83144 1.19775 1.21055 1.21019 0.93155 0.93359 0.90969 0.90428 0.91434 0.90032 0.91860 0.84058 0.91398 0.95657 0.92836 0.91703 0.93473 0.93729 0.96743 0.96595 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.92 37.16 0.33 -0.89 16 2 C -0.10 -1.01 4.51 -89.81 -0.41 -1.42 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.19 7.67 -25.78 -0.20 -1.39 16 5 C -0.17 -1.61 7.35 -25.78 -0.19 -1.80 16 6 C 0.07 0.75 4.07 -66.91 -0.27 0.48 16 7 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 8 N -0.68 -8.63 5.58 -105.87 -0.59 -9.22 16 9 C 0.06 0.85 5.53 -3.82 -0.02 0.83 16 10 C -0.12 -2.03 5.47 -26.73 -0.15 -2.17 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H 0.05 0.47 7.33 -51.93 -0.38 0.09 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.79 7.83 -51.93 -0.41 0.39 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.08 0.77 7.32 -51.93 -0.38 0.39 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.34 4.13 8.12 -39.29 -0.32 3.81 16 29 H 0.07 1.00 8.13 -51.92 -0.42 0.57 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 298.27 15.07 4.49 4.49 Total: -1.00 -30.05 298.27 -8.90 -38.95 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.93 Total: -2.13 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.59 Total: -22.32 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.15 Total: -36.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.05 -8.90 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.694 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds