Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 112.84682 * 2 1 4 4 C 1.53778 * 113.61622 * 131.19704 * 2 1 3 5 5 C 1.54052 * 86.98384 * 89.16295 * 4 2 1 6 6 C 1.53777 * 113.61373 * 228.80735 * 2 1 3 7 7 H 1.08997 * 113.61512 * 156.25248 * 6 2 1 8 8 N 1.46896 * 113.61703 * 25.43008 * 6 2 1 9 9 C 1.46903 * 110.99962 * 155.00323 * 8 6 2 10 10 C 1.53001 * 109.47219 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47307 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47307 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47362 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99783 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00029 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47040 * 120.00045 * 17 15 13 20 20 H 1.48501 * 109.47116 * 239.99884 * 17 15 13 21 21 H 1.09001 * 109.47002 * 189.66377 * 1 2 3 22 22 H 1.08993 * 109.46955 * 309.66814 * 1 2 3 23 23 H 1.09000 * 109.47050 * 69.66643 * 1 2 3 24 24 H 1.08996 * 113.61691 * 203.66828 * 4 2 1 25 25 H 1.09001 * 113.61184 * 334.57099 * 4 2 1 26 26 H 1.09005 * 113.61368 * 270.88047 * 5 4 2 27 27 H 1.09006 * 113.61675 * 139.98387 * 5 4 2 28 28 H 1.00907 * 111.00000 * 278.95108 * 8 6 2 29 29 H 1.09007 * 109.46812 * 299.99782 * 9 8 6 30 30 H 1.09002 * 109.47565 * 59.99789 * 9 8 6 31 31 H 1.09000 * 109.47252 * 300.00013 * 10 9 8 32 32 H 1.09002 * 109.46951 * 59.99503 * 10 9 8 33 33 H 1.09000 * 109.47308 * 300.00386 * 11 10 9 34 34 H 1.09002 * 109.47189 * 60.00056 * 11 10 9 35 35 H 1.09000 * 109.47252 * 300.00420 * 12 11 10 36 36 H 1.09002 * 109.46951 * 59.99910 * 12 11 10 37 37 H 0.97000 * 119.99883 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1461 -0.9280 1.0602 5 6 2.0930 -2.0425 -0.0021 6 6 2.1460 -0.9280 -1.0603 7 1 3.1585 -0.6476 -1.3507 8 7 1.2680 -1.1688 -2.2131 9 6 2.0497 -1.5252 -3.4047 10 6 1.1029 -1.7686 -4.5817 11 6 1.9169 -2.1391 -5.8230 12 6 0.9701 -2.3831 -6.9998 13 6 1.7719 -2.7487 -8.2223 14 1 2.8490 -2.8021 -8.1655 15 6 1.1303 -3.0150 -9.4133 16 7 -0.1814 -2.9505 -9.4823 17 14 2.1242 -3.4688 -10.9284 18 1 3.5698 -3.4739 -10.5889 19 1 1.7219 -4.8189 -11.3982 20 1 1.8709 -2.4752 -12.0025 21 1 -0.3633 -1.0131 0.1725 22 1 -0.3633 0.6560 0.7910 23 1 -0.3633 0.3571 -0.9636 24 1 3.1591 -0.6485 1.3496 25 1 1.4946 -1.1068 1.9155 26 1 1.1570 -2.6010 -0.0026 27 1 2.9718 -2.6874 -0.0026 28 1 0.5834 -1.8799 -2.0038 29 1 2.7316 -0.7106 -3.6489 30 1 2.6223 -2.4312 -3.2062 31 1 0.4213 -2.5833 -4.3373 32 1 0.5299 -0.8629 -4.7804 33 1 2.5983 -1.3241 -6.0673 34 1 2.4902 -3.0447 -5.6246 35 1 0.2891 -3.1983 -6.7552 36 1 0.3965 -1.4778 -7.1984 37 1 -0.6328 -3.1382 -10.3201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385305392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = -30.552746 kcal Electronic energy + Delta-G solvation = -13641.374679 eV Core-core repulsion = 11417.162798 eV Total energy + Delta-G solvation = -2224.211881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41775 -37.16677 -35.28231 -33.43258 -30.14003 -29.78972 -26.52840 -24.66725 -24.45457 -22.81853 -21.78756 -19.41290 -18.41581 -17.05717 -16.68610 -16.50621 -16.08800 -15.33654 -14.87826 -14.50781 -13.97506 -13.63361 -13.58601 -13.19194 -13.08447 -13.02579 -12.85567 -12.65813 -12.33808 -12.12067 -12.10517 -11.60660 -11.39843 -11.35777 -11.21027 -11.05870 -10.77873 -10.56184 -9.21060 -8.20157 -6.31756 1.39544 1.40108 1.53699 2.40892 3.12532 3.24448 3.69147 3.77002 3.94802 4.01514 4.13757 4.28910 4.51704 4.61693 4.66931 4.71678 4.73325 4.82636 4.87184 4.93523 5.03142 5.06192 5.19564 5.25264 5.26814 5.32143 5.36491 5.46474 5.55064 5.61480 5.77728 5.86705 6.20248 6.25920 6.51163 6.85955 7.37668 8.92004 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.082650 B = 0.004164 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.697156 B = 6722.036768 C = 6906.174655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 H 0.072 0.928 4 C -0.130 4.130 5 C -0.166 4.166 6 C 0.060 3.940 7 H 0.092 0.908 8 N -0.683 5.683 9 C 0.071 3.929 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.022 3.978 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.344 0.656 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.050 0.950 35 H -0.010 1.010 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 3.493 19.899 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.125 4.125 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.205 4.205 6 C -0.050 4.050 7 H 0.110 0.890 8 N -0.313 5.313 9 C -0.058 4.058 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.163 0.837 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.423 4.140 19.605 20.520 hybrid contribution 0.339 -1.153 -0.894 1.498 sum 4.762 2.987 18.711 19.537 Atomic orbital electron populations 1.21396 0.93556 1.01532 1.01665 1.22546 0.96593 0.98245 0.95078 0.91003 1.22845 1.01563 0.95856 0.96476 1.23651 1.02171 0.97120 0.97541 1.23190 0.96190 0.97094 0.88541 0.89029 1.60395 1.16803 1.50241 1.03854 1.21866 0.95242 0.98986 0.89669 1.21466 0.98068 1.00770 0.94030 1.21399 0.97962 0.99929 0.94221 1.19037 0.94644 0.94565 0.93296 1.21776 0.93832 1.46596 0.96059 0.92212 1.26032 0.96047 0.95352 1.02645 1.70114 1.09372 1.50596 1.27420 0.85367 0.79068 0.77905 0.78507 1.18545 1.20258 1.20279 0.92879 0.92265 0.92662 0.89437 0.90538 0.89952 0.91601 0.83721 0.91364 0.95087 0.92913 0.92753 0.93150 0.93157 0.99185 0.99265 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.92 71.98 0.64 -1.58 16 2 C -0.11 -1.87 4.51 -10.27 -0.05 -1.92 16 3 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.13 -1.90 7.67 31.21 0.24 -1.66 16 5 C -0.17 -2.80 7.35 31.21 0.23 -2.57 16 6 C 0.06 1.21 4.07 45.44 0.19 1.40 16 7 H 0.09 1.88 7.87 -2.39 -0.02 1.86 16 8 N -0.68 -16.64 5.58 -488.86 -2.73 -19.36 16 9 C 0.07 1.99 5.53 86.30 0.48 2.47 16 10 C -0.11 -3.67 5.47 30.59 0.17 -3.51 16 11 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16 12 C 0.02 1.19 4.97 29.85 0.15 1.34 16 13 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 16 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 17 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H 0.05 0.91 7.33 -2.39 -0.02 0.89 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 1.18 7.83 -2.39 -0.02 1.16 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 26 H 0.08 1.39 7.32 -2.38 -0.02 1.37 16 27 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.34 7.98 8.12 -89.69 -0.73 7.25 16 29 H 0.07 1.91 8.13 -2.38 -0.02 1.89 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -63.99 298.27 2.75 -61.24 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.27 Total: 10.51 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 2.90 Total: -41.50 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -2.44 Total: -77.35 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.99 2.75 -61.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385305392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.686 kcal (2) G-P(sol) polarization free energy of solvation -63.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds