Wall clock time and date at job start Mon Mar 30 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54762 * 2 1 4 4 C 1.53001 * 117.50064 * 214.29337 * 2 1 3 5 5 C 1.52994 * 117.50137 * 145.67140 * 2 1 3 6 6 H 1.09008 * 117.50231 * 214.98172 * 5 2 1 7 7 C 1.53005 * 117.50110 * 359.97356 * 5 2 1 8 8 N 1.46894 * 109.47219 * 184.99996 * 7 5 2 9 9 C 1.46901 * 110.99565 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47129 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47405 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47072 * 180.02562 * 12 11 10 14 14 H 1.08010 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00019 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00100 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47269 * 59.99853 * 17 15 13 19 19 H 1.48500 * 109.47342 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47347 * 299.99693 * 17 15 13 21 21 H 1.09002 * 109.47153 * 274.32865 * 1 2 3 22 22 H 1.09001 * 109.46832 * 154.33056 * 1 2 3 23 23 H 1.09004 * 109.47261 * 34.33037 * 1 2 3 24 24 H 1.08997 * 117.49845 * 359.97438 * 4 2 1 25 25 H 1.08999 * 117.50024 * 145.02000 * 4 2 1 26 26 H 1.08997 * 109.46630 * 305.00741 * 7 5 2 27 27 H 1.08999 * 109.46292 * 65.00144 * 7 5 2 28 28 H 1.00895 * 110.99910 * 56.05293 * 8 7 5 29 29 H 1.09000 * 109.47113 * 300.00162 * 9 8 7 30 30 H 1.08996 * 109.47163 * 60.00378 * 9 8 7 31 31 H 1.09000 * 109.47059 * 299.99955 * 10 9 8 32 32 H 1.09004 * 109.46724 * 59.99802 * 10 9 8 33 33 H 1.09000 * 109.47194 * 300.00140 * 11 10 9 34 34 H 1.09008 * 109.47038 * 59.99809 * 11 10 9 35 35 H 1.08994 * 109.46994 * 300.00200 * 12 11 10 36 36 H 1.08996 * 109.46815 * 60.00520 * 12 11 10 37 37 H 0.97003 * 120.00256 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7653 6 1 3.1716 -0.8747 1.2686 7 6 1.3589 -2.1554 1.4726 8 7 2.2083 -3.0721 2.2447 9 6 1.3980 -4.0820 2.9385 10 6 2.3154 -5.0159 3.7305 11 6 1.4715 -6.0674 4.4536 12 6 2.3890 -7.0016 5.2450 13 6 1.5577 -8.0377 5.9568 14 1 0.4825 -8.0308 5.8545 15 6 2.1697 -8.9944 6.7385 16 7 3.4789 -9.0031 6.8627 17 14 1.1394 -10.2791 7.6202 18 1 0.3720 -11.0678 6.6230 19 1 2.0298 -11.1858 8.3885 20 1 0.1972 -9.6055 8.5496 21 1 -0.3633 0.0776 1.0247 22 1 -0.3633 -0.9263 -0.4452 23 1 -0.3634 0.8487 -0.5796 24 1 1.6113 -1.8591 -1.2673 25 1 3.1715 -0.8755 -1.2680 26 1 0.6680 -1.6469 2.1450 27 1 0.7945 -2.7207 0.7311 28 1 2.7894 -2.5651 2.8952 29 1 0.7070 -3.5873 3.6210 30 1 0.8341 -4.6607 2.2069 31 1 3.0066 -5.5107 3.0482 32 1 2.8790 -4.4369 4.4621 33 1 0.7805 -5.5723 5.1359 34 1 0.9075 -6.6464 3.7222 35 1 3.0796 -7.4966 4.5624 36 1 2.9531 -6.4229 5.9764 37 1 3.9095 -9.6759 7.4130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385312240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:36 Heat of formation + Delta-G solvation = -10.513009 kcal Electronic energy + Delta-G solvation = -13292.554832 eV Core-core repulsion = 11069.211939 eV Total energy + Delta-G solvation = -2223.342893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.58333 -36.19030 -33.90898 -32.02921 -29.14162 -28.33144 -25.79400 -23.63711 -21.75320 -21.32506 -20.08958 -19.47012 -16.25380 -16.08898 -15.81684 -14.74537 -14.39123 -14.33256 -13.78852 -13.27382 -13.06960 -12.67221 -12.34500 -12.22923 -11.73672 -11.63052 -11.42500 -11.17611 -10.96759 -10.55780 -10.51675 -10.39196 -10.09991 -9.97541 -9.59123 -9.22100 -8.97873 -8.32422 -8.29172 -5.95078 -3.97364 3.35971 3.40041 3.42675 3.53224 4.19355 4.48655 4.50056 4.69537 4.84044 5.06770 5.25010 5.33454 5.40181 5.48152 5.51450 5.54841 5.62828 5.66246 5.70174 5.78578 5.94391 6.03708 6.10528 6.19569 6.30123 6.55234 6.86438 7.00207 7.09043 7.27227 7.46224 7.73844 7.90386 8.06199 8.48967 9.10011 9.66265 11.16287 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.091007 B = 0.003692 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.595973 B = 7581.951843 C = 7771.410786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.159 4.159 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.144 4.144 6 H 0.105 0.895 7 C 0.090 3.910 8 N -0.690 5.690 9 C 0.059 3.941 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.339 0.661 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 16.592 -12.234 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.177 4.177 3 H 0.120 0.880 4 C -0.207 4.207 5 C -0.162 4.162 6 H 0.123 0.877 7 C -0.039 4.039 8 N -0.321 5.321 9 C -0.069 4.069 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.798 16.078 -12.689 20.832 hybrid contribution -0.809 -0.210 1.236 1.492 sum -4.607 15.868 -11.453 20.104 Atomic orbital electron populations 1.21342 0.92978 1.01895 1.01808 1.22398 0.95410 0.94439 1.05481 0.88039 1.23122 1.02292 1.01085 0.94226 1.22343 1.00941 0.98756 0.94193 0.87675 1.21470 0.93733 0.92136 0.96569 1.60484 1.23923 1.17085 1.30600 1.22073 0.95334 0.93392 0.96139 1.21638 0.98360 0.96989 0.98355 1.21594 0.98589 0.96279 0.98273 1.19086 0.94530 0.93402 0.94570 1.21265 0.93330 1.12788 1.28548 0.92826 1.25034 0.94904 0.97828 0.96768 1.69959 1.08352 1.35337 1.39951 0.86666 0.80103 0.81492 0.79775 1.20259 1.21301 1.20289 0.92240 0.92442 0.92331 0.88770 0.89012 0.95119 0.91108 0.84329 0.95637 0.91348 0.91636 0.92755 0.93693 0.93453 0.96596 0.96736 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.16 -1.34 6.41 -90.62 -0.58 -1.92 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.17 -1.54 9.82 -26.73 -0.26 -1.80 16 5 C -0.14 -1.41 5.95 -90.62 -0.54 -1.95 16 6 H 0.11 1.03 8.13 -51.92 -0.42 0.61 16 7 C 0.09 1.01 5.05 -3.82 -0.02 0.99 16 8 N -0.69 -9.08 6.50 -113.78 -0.74 -9.82 16 9 C 0.06 0.88 5.69 -3.82 -0.02 0.85 16 10 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H 0.06 0.46 7.83 -51.93 -0.41 0.06 16 22 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.85 7.94 -51.93 -0.41 0.44 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.34 7.77 -51.93 -0.40 -0.07 16 27 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 28 H 0.34 4.16 8.72 -39.29 -0.34 3.81 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -30.37 304.70 -9.35 -39.72 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.00 Total: -2.06 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -1.92 Total: -22.63 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.00 Total: -36.67 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.37 -9.35 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385312240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.208 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds