Wall clock time and date at job start Mon Mar 30 2020 03:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.87146 * 2 1 4 4 C 1.55130 * 110.99070 * 236.15421 * 2 1 3 5 5 C 1.54322 * 103.01918 * 206.21736 * 4 2 1 6 6 N 1.47439 * 107.23154 * 22.28254 * 5 4 2 7 7 C 1.46893 * 110.99963 * 123.26236 * 6 5 4 8 8 C 1.53001 * 109.47408 * 69.87044 * 7 6 5 9 9 C 1.53000 * 109.47355 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47355 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47843 * 108.56767 * 0.99063 * 6 5 4 20 20 H 1.09002 * 109.46708 * 182.39645 * 1 2 3 21 21 H 1.09005 * 109.46849 * 302.39241 * 1 2 3 22 22 H 1.08991 * 109.47366 * 62.39643 * 1 2 3 23 23 H 1.09000 * 110.70903 * 87.83256 * 4 2 1 24 24 H 1.09003 * 110.70812 * 324.59566 * 4 2 1 25 25 H 1.09008 * 109.88655 * 262.87767 * 5 4 2 26 26 H 1.08994 * 109.89080 * 141.69268 * 5 4 2 27 27 H 1.08994 * 109.47037 * 309.86979 * 7 6 5 28 28 H 1.09003 * 109.47550 * 189.87131 * 7 6 5 29 29 H 1.09002 * 109.46926 * 60.00242 * 8 7 6 30 30 H 1.08992 * 109.47494 * 300.00236 * 8 7 6 31 31 H 1.09002 * 109.46807 * 60.00291 * 9 8 7 32 32 H 1.08998 * 109.47285 * 299.99893 * 9 8 7 33 33 H 1.09007 * 109.46922 * 59.99890 * 10 9 8 34 34 H 1.09003 * 109.46836 * 300.00646 * 10 9 8 35 35 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 36 36 H 1.08995 * 110.37206 * 94.73973 * 19 6 5 37 37 H 1.09000 * 110.37166 * 217.07590 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0858 -0.8067 -1.2029 5 6 3.4697 -1.2700 -0.7012 6 7 3.4322 -1.2411 0.7724 7 6 3.7630 -2.5577 1.3334 8 6 5.2449 -2.8556 1.0961 9 6 5.5896 -4.2267 1.6809 10 6 7.0713 -4.5248 1.4431 11 6 7.4106 -5.8756 2.0186 12 1 6.6459 -6.4630 2.5050 13 6 8.6975 -6.3616 1.9242 14 7 9.6286 -5.6466 1.3315 15 14 9.1182 -8.0357 2.6383 16 1 9.5468 -7.8777 4.0513 17 1 7.9222 -8.9140 2.5790 18 1 10.2202 -8.6463 1.8521 19 6 2.0857 -0.8057 1.2006 20 1 -0.3633 -1.0268 0.0430 21 1 -0.3633 0.5506 0.8678 22 1 -0.3633 0.4761 -0.9106 23 1 2.1878 -0.1686 -2.0807 24 1 1.4479 -1.6635 -1.4201 25 1 4.2421 -0.5928 -1.0659 26 1 3.6691 -2.2841 -1.0473 27 1 3.1565 -3.3222 0.8479 28 1 3.5593 -2.5581 2.4042 29 1 5.8514 -2.0910 1.5816 30 1 5.4487 -2.8552 0.0254 31 1 4.9831 -4.9915 1.1958 32 1 5.3860 -4.2266 2.7517 33 1 7.6781 -3.7600 1.9279 34 1 7.2745 -4.5250 0.3722 35 1 10.5340 -5.9884 1.2655 36 1 1.4537 -1.6705 1.4025 37 1 2.1553 -0.1710 2.0840 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385791749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:04 Heat of formation + Delta-G solvation = -30.054015 kcal Electronic energy + Delta-G solvation = -13809.716264 eV Core-core repulsion = 11585.526009 eV Total energy + Delta-G solvation = -2224.190255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18718 -35.17471 -33.26564 -31.73884 -29.73727 -28.31415 -25.82944 -24.17892 -22.15544 -20.57022 -20.23804 -19.65814 -16.40441 -16.15361 -15.43699 -14.68404 -14.41582 -13.87898 -13.70823 -13.12983 -13.08524 -12.56800 -12.38054 -12.20515 -11.65736 -11.43665 -11.18804 -11.07670 -10.91756 -10.80860 -10.68040 -10.43798 -10.41689 -10.32212 -9.57082 -9.21087 -8.96040 -8.29457 -8.19193 -5.94521 -3.96618 3.34932 3.40761 3.44359 4.05695 4.44224 4.50623 4.60614 4.80566 5.18403 5.27169 5.33944 5.39712 5.41212 5.50075 5.57165 5.62376 5.68624 5.78244 5.86854 5.96935 5.97901 6.05198 6.19434 6.23574 6.32021 6.58264 6.87588 7.03438 7.10336 7.16196 7.32695 7.75066 7.91533 8.07031 8.49882 9.10971 9.66965 11.16861 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.084940 B = 0.004427 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.564493 B = 6323.802258 C = 6453.202581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.139 4.139 5 C 0.040 3.960 6 N -0.532 5.532 7 C 0.052 3.948 8 C -0.112 4.112 9 C -0.109 4.109 10 C 0.021 3.979 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.287 1.287 19 C 0.045 3.955 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.044 0.956 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.361 10.296 -3.288 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.101 0.899 4 C -0.177 4.177 5 C -0.088 4.088 6 N -0.256 5.256 7 C -0.076 4.076 8 C -0.150 4.150 9 C -0.148 4.148 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.199 1.199 18 H -0.213 1.213 19 C -0.083 4.083 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.795 10.626 -3.146 19.294 hybrid contribution -0.209 -1.551 0.080 1.567 sum -16.004 9.075 -3.066 18.652 Atomic orbital electron populations 1.21717 0.94644 1.01814 1.01714 1.22298 0.95352 0.99742 0.94845 0.89935 1.22873 0.96920 0.99764 0.98153 1.22849 0.96748 1.01188 0.87982 1.63587 1.26346 1.27930 1.07711 1.22403 0.97881 0.87834 0.99457 1.21642 0.93464 0.98862 1.01028 1.21604 1.00389 0.93663 0.99110 1.19090 0.89296 0.96292 0.96920 1.21300 0.94736 1.02995 1.36772 0.92793 1.25040 0.96587 0.97449 0.95489 1.69974 1.02229 1.37660 1.43708 0.86610 0.78019 0.84393 0.79069 1.20681 1.19927 1.21252 1.23098 0.89052 0.98167 0.97943 0.92724 0.92499 0.92536 0.90972 0.91628 0.90601 0.92302 0.95113 0.91218 0.91748 0.92699 0.93779 0.93502 0.96600 0.96747 0.93072 0.93748 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.30 37.16 0.35 -0.76 16 2 C -0.10 -0.99 3.63 -88.49 -0.32 -1.32 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.14 -1.40 6.41 -24.91 -0.16 -1.56 16 5 C 0.04 0.51 6.21 -2.84 -0.02 0.49 16 6 N -0.53 -7.43 5.16 -231.26 -1.19 -8.62 16 7 C 0.05 0.79 4.54 -3.83 -0.02 0.78 16 8 C -0.11 -2.04 5.24 -26.73 -0.14 -2.18 16 9 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 10 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 11 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 15 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 C 0.05 0.52 6.15 -2.30 -0.01 0.50 16 20 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 25 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.06 0.79 6.91 -51.93 -0.36 0.43 16 27 H 0.03 0.46 7.96 -51.93 -0.41 0.05 16 28 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.00 7.14 -51.93 -0.37 0.63 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -30.60 295.00 -9.04 -39.63 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -6.99 Total: -5.55 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.01 Total: -20.09 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.46 Total: -35.52 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.60 -9.04 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385791749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.579 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds