Wall clock time and date at job start Mon Mar 30 2020 03:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.87146 * 2 1 4 4 C 1.55130 * 110.99070 * 236.15421 * 2 1 3 5 5 C 1.54322 * 103.01918 * 206.21736 * 4 2 1 6 6 N 1.47439 * 107.23154 * 22.28254 * 5 4 2 7 7 C 1.46893 * 110.99963 * 123.26236 * 6 5 4 8 8 C 1.53001 * 109.47408 * 69.87044 * 7 6 5 9 9 C 1.53000 * 109.47355 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47355 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47843 * 108.56767 * 0.99063 * 6 5 4 20 20 H 1.09002 * 109.46708 * 182.39645 * 1 2 3 21 21 H 1.09005 * 109.46849 * 302.39241 * 1 2 3 22 22 H 1.08991 * 109.47366 * 62.39643 * 1 2 3 23 23 H 1.09000 * 110.70903 * 87.83256 * 4 2 1 24 24 H 1.09003 * 110.70812 * 324.59566 * 4 2 1 25 25 H 1.09008 * 109.88655 * 262.87767 * 5 4 2 26 26 H 1.08994 * 109.89080 * 141.69268 * 5 4 2 27 27 H 1.08994 * 109.47037 * 309.86979 * 7 6 5 28 28 H 1.09003 * 109.47550 * 189.87131 * 7 6 5 29 29 H 1.09002 * 109.46926 * 60.00242 * 8 7 6 30 30 H 1.08992 * 109.47494 * 300.00236 * 8 7 6 31 31 H 1.09002 * 109.46807 * 60.00291 * 9 8 7 32 32 H 1.08998 * 109.47285 * 299.99893 * 9 8 7 33 33 H 1.09007 * 109.46922 * 59.99890 * 10 9 8 34 34 H 1.09003 * 109.46836 * 300.00646 * 10 9 8 35 35 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 36 36 H 1.08995 * 110.37206 * 94.73973 * 19 6 5 37 37 H 1.09000 * 110.37166 * 217.07590 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0858 -0.8067 -1.2029 5 6 3.4697 -1.2700 -0.7012 6 7 3.4322 -1.2411 0.7724 7 6 3.7630 -2.5577 1.3334 8 6 5.2449 -2.8556 1.0961 9 6 5.5896 -4.2267 1.6809 10 6 7.0713 -4.5248 1.4431 11 6 7.4106 -5.8756 2.0186 12 1 6.6459 -6.4630 2.5050 13 6 8.6975 -6.3616 1.9242 14 7 9.6286 -5.6466 1.3315 15 14 9.1182 -8.0357 2.6383 16 1 9.5468 -7.8777 4.0513 17 1 7.9222 -8.9140 2.5790 18 1 10.2202 -8.6463 1.8521 19 6 2.0857 -0.8057 1.2006 20 1 -0.3633 -1.0268 0.0430 21 1 -0.3633 0.5506 0.8678 22 1 -0.3633 0.4761 -0.9106 23 1 2.1878 -0.1686 -2.0807 24 1 1.4479 -1.6635 -1.4201 25 1 4.2421 -0.5928 -1.0659 26 1 3.6691 -2.2841 -1.0473 27 1 3.1565 -3.3222 0.8479 28 1 3.5593 -2.5581 2.4042 29 1 5.8514 -2.0910 1.5816 30 1 5.4487 -2.8552 0.0254 31 1 4.9831 -4.9915 1.1958 32 1 5.3860 -4.2266 2.7517 33 1 7.6781 -3.7600 1.9279 34 1 7.2745 -4.5250 0.3722 35 1 10.5340 -5.9884 1.2655 36 1 1.4537 -1.6705 1.4025 37 1 2.1553 -0.1710 2.0840 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385791749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:04 Heat of formation + Delta-G solvation = -48.357785 kcal Electronic energy + Delta-G solvation = -13810.509975 eV Core-core repulsion = 11585.526009 eV Total energy + Delta-G solvation = -2224.983966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16377 -36.76727 -34.97204 -33.34327 -30.77365 -29.85872 -27.13889 -25.62672 -23.63575 -21.93933 -21.51280 -20.80665 -18.41992 -17.35517 -16.64628 -16.35552 -16.10012 -15.02485 -14.65015 -14.36253 -14.32402 -13.97982 -13.70053 -13.44854 -13.20156 -12.90682 -12.79386 -12.44203 -12.24173 -12.18812 -11.92930 -11.84013 -11.57284 -11.50076 -11.35141 -11.29432 -10.96299 -10.56015 -9.25670 -8.20240 -6.32131 1.39282 1.41397 1.52526 2.40737 3.02407 3.12274 3.63011 3.75265 3.98053 4.10160 4.20808 4.34127 4.50686 4.54473 4.55358 4.62630 4.73072 4.82432 4.84793 4.87030 4.90824 5.00352 5.07349 5.17417 5.25151 5.26706 5.29467 5.34072 5.46561 5.53955 5.75987 5.85669 6.07710 6.15272 6.25149 6.85232 7.37216 8.91799 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.084940 B = 0.004427 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.564493 B = 6323.802258 C = 6453.202581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.084 0.916 4 C -0.133 4.133 5 C 0.035 3.965 6 N -0.548 5.548 7 C 0.063 3.937 8 C -0.101 4.101 9 C -0.097 4.097 10 C 0.023 3.977 11 C -0.546 4.546 12 H 0.060 0.940 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.262 1.262 18 H -0.281 1.281 19 C 0.042 3.958 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.052 0.948 33 H -0.011 1.011 34 H -0.012 1.012 35 H 0.264 0.736 36 H 0.048 0.952 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.951 9.956 -2.943 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.102 0.898 4 C -0.171 4.171 5 C -0.093 4.093 6 N -0.272 5.272 7 C -0.065 4.065 8 C -0.139 4.139 9 C -0.135 4.135 10 C -0.014 4.014 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.186 1.186 18 H -0.206 1.206 19 C -0.085 4.085 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.406 10.297 -2.801 20.417 hybrid contribution 0.320 -1.396 -0.049 1.433 sum -17.086 8.902 -2.850 19.475 Atomic orbital electron populations 1.21685 0.92989 1.02068 1.02685 1.22288 0.96621 0.99288 0.93484 0.89810 1.22849 0.95196 1.00212 0.98838 1.22889 0.98429 1.00550 0.87447 1.63526 1.28292 1.26860 1.08497 1.22180 0.95386 0.88956 0.99989 1.21463 0.95760 0.96530 1.00164 1.21408 0.96580 0.95719 0.99761 1.19018 0.92610 0.95056 0.94724 1.21743 0.95404 1.04022 1.37197 0.92134 1.26049 0.96395 1.01983 0.95670 1.70113 1.02769 1.39851 1.44781 0.85404 0.78101 0.78877 0.78399 1.19657 1.18642 1.20636 1.23188 0.87825 0.98595 0.98925 0.92804 0.91700 0.91458 0.89542 0.91237 0.91090 0.93444 0.94679 0.90653 0.92878 0.93283 0.93202 0.92928 0.99290 0.99333 0.92747 0.93401 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.30 71.98 0.67 -1.10 16 2 C -0.10 -1.67 3.63 -9.41 -0.03 -1.70 16 3 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 4 C -0.13 -2.43 6.41 31.77 0.20 -2.22 16 5 C 0.03 0.85 6.21 86.65 0.54 1.39 16 6 N -0.55 -14.76 5.16 -885.58 -4.57 -19.33 16 7 C 0.06 1.87 4.54 86.30 0.39 2.26 16 8 C -0.10 -3.71 5.24 30.59 0.16 -3.55 16 9 C -0.10 -4.17 5.15 30.59 0.16 -4.01 16 10 C 0.02 1.28 4.97 29.85 0.15 1.43 16 11 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 12 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 13 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 14 N -0.93 -58.62 13.29 21.45 0.28 -58.33 16 15 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 C 0.04 0.89 6.15 86.77 0.53 1.42 16 20 H 0.05 0.71 8.10 -2.39 -0.02 0.70 16 21 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 22 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 25 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.05 1.26 6.91 -2.39 -0.02 1.24 16 27 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 28 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.83 7.14 -2.39 -0.02 1.81 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 36 H 0.05 0.99 7.68 -2.39 -0.02 0.97 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -65.46 295.00 2.19 -63.27 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.99 Total: 5.01 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.46 Total: -37.85 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -4.28 Total: -77.66 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.46 2.19 -63.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385791749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.908 kcal (2) G-P(sol) polarization free energy of solvation -65.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds