Wall clock time and date at job start Mon Mar 30 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47092 * 2 1 4 4 C 1.53003 * 109.47102 * 120.00237 * 2 1 3 5 5 C 1.50700 * 109.47090 * 185.00068 * 4 2 1 6 6 H 1.08002 * 120.00338 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00122 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00318 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99580 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47022 * 90.00136 * 9 7 5 11 11 H 1.48499 * 109.47033 * 209.99634 * 9 7 5 12 12 H 1.48500 * 109.47474 * 330.00017 * 9 7 5 13 13 N 1.46900 * 109.47332 * 239.99882 * 2 1 3 14 14 C 1.46909 * 110.99705 * 85.00198 * 13 2 1 15 15 C 1.53002 * 109.46750 * 204.99952 * 14 13 2 16 16 C 1.52997 * 109.46817 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.47127 * 60.00361 * 16 15 14 18 18 C 1.52999 * 109.46626 * 299.99539 * 17 16 15 19 19 C 1.52996 * 109.47268 * 85.00275 * 14 13 2 20 20 H 1.09008 * 109.46570 * 59.99945 * 1 2 3 21 21 H 1.08993 * 109.46908 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47407 * 300.00216 * 1 2 3 23 23 H 1.09006 * 109.46506 * 304.99494 * 4 2 1 24 24 H 1.08996 * 109.47013 * 64.99768 * 4 2 1 25 25 H 0.97001 * 120.00112 * 180.02562 * 8 7 5 26 26 H 1.00899 * 111.00419 * 321.04814 * 13 2 1 27 27 H 1.08996 * 109.46883 * 324.99928 * 14 13 2 28 28 H 1.09002 * 109.47070 * 60.00054 * 15 14 13 29 29 H 1.08996 * 109.47407 * 299.99654 * 15 14 13 30 30 H 1.09001 * 109.47502 * 300.00518 * 16 15 14 31 31 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 32 32 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 33 33 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.46719 * 180.02562 * 18 17 16 35 35 H 1.08993 * 109.47839 * 299.99931 * 18 17 16 36 36 H 1.09001 * 109.46993 * 300.00132 * 19 14 13 37 37 H 1.09000 * 109.47380 * 59.99238 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5397 7 6 4.2304 -1.1927 2.3583 8 7 5.5409 -1.0995 2.4140 9 14 3.3013 -2.1067 3.6966 10 1 3.1696 -3.5369 3.3193 11 1 4.0451 -1.9991 4.9774 12 1 1.9506 -1.5107 3.8569 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2227 -2.3469 15 6 1.9771 -0.5797 -3.6454 16 6 2.0419 0.3735 -4.8404 17 6 3.3704 1.1323 -4.8162 18 6 3.4757 1.9346 -3.5177 19 6 3.4112 0.9809 -2.3224 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.6054 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2055 25 1 6.0253 -1.5063 3.1495 26 1 1.4496 -1.4979 -1.4101 27 1 1.2577 0.9330 -2.2907 28 1 1.0306 -1.1199 -3.6629 29 1 2.8020 -1.2899 -3.7016 30 1 1.2169 1.0836 -4.7840 31 1 1.9664 -0.1980 -5.7655 32 1 4.1954 0.4223 -4.8726 33 1 3.4167 1.8110 -5.6678 34 1 4.4219 2.4755 -3.5006 35 1 2.6507 2.6446 -3.4612 36 1 3.4863 1.5524 -1.3972 37 1 4.2360 0.2706 -2.3785 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388652275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:14 Heat of formation + Delta-G solvation = -51.974339 kcal Electronic energy + Delta-G solvation = -14636.042268 eV Core-core repulsion = 12410.901477 eV Total energy + Delta-G solvation = -2225.140791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.90589 -37.28212 -34.64717 -32.56752 -31.59754 -29.76054 -28.30434 -24.72058 -23.57085 -22.56675 -21.12379 -20.51528 -18.75754 -16.96803 -16.34384 -15.93745 -15.57139 -15.18016 -14.84299 -14.71870 -14.31904 -14.00225 -13.58755 -13.35750 -13.12468 -13.01949 -12.70688 -12.55196 -12.21603 -11.98586 -11.92830 -11.67356 -11.49148 -11.39242 -11.16891 -10.99375 -10.86947 -10.66033 -8.95712 -8.15915 -6.14387 1.37497 1.39148 1.50318 2.43354 3.16437 3.37899 3.85591 3.90199 4.16704 4.22089 4.34619 4.39428 4.47891 4.54611 4.56666 4.65417 4.68877 4.76585 4.92663 4.99137 5.13579 5.14656 5.16799 5.24227 5.30633 5.32281 5.34642 5.39544 5.47861 5.55954 5.62129 5.78359 6.41107 6.56608 6.82595 6.94308 7.45885 9.01725 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.008008 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.092149 B = 3495.494787 C = 3912.605264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 H 0.049 0.951 4 C -0.003 4.003 5 C -0.488 4.488 6 H 0.033 0.967 7 C -0.008 4.008 8 N -0.961 5.961 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.686 5.686 14 C 0.096 3.904 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.104 4.104 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.018 0.982 24 H 0.015 0.985 25 H 0.260 0.740 26 H 0.338 0.662 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 3.084 -13.012 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 H 0.068 0.932 4 C -0.040 4.040 5 C -0.526 4.526 6 H 0.052 0.948 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.317 5.317 14 C -0.014 4.014 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.143 4.143 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.157 0.843 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.433 3.117 -12.745 16.763 hybrid contribution -0.413 -0.354 0.871 1.027 sum -10.846 2.763 -11.874 16.318 Atomic orbital electron populations 1.22429 0.96005 1.02296 1.02154 1.21338 0.92290 0.96550 0.90560 0.93235 1.19577 0.94483 0.95831 0.94147 1.21339 0.92189 1.32230 1.06866 0.94820 1.25992 0.95553 0.97755 1.00892 1.70092 1.08497 1.48198 1.33602 0.85697 0.79624 0.79276 0.78158 1.19767 1.21554 1.17116 1.60353 1.58356 1.09637 1.03348 1.21462 0.95894 0.93893 0.90141 1.21677 1.01954 0.98128 0.93557 1.21479 0.97632 0.98142 0.97486 1.21538 0.97873 0.99034 0.96995 1.21522 1.01807 0.97532 0.94264 1.21484 0.97724 0.97731 0.97353 0.91972 0.91984 0.92004 0.96396 0.96699 0.93149 0.84267 0.94052 0.91003 0.92611 0.91274 0.90327 0.92834 0.90241 0.92209 0.91398 0.95204 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 9.15 71.98 0.66 -4.36 16 2 C 0.10 4.02 2.34 44.92 0.11 4.13 16 3 H 0.05 2.11 7.11 -2.38 -0.02 2.10 16 4 C 0.00 -0.12 3.72 29.85 0.11 -0.01 16 5 C -0.49 -29.05 9.39 25.60 0.24 -28.81 16 6 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 7 C -0.01 -0.47 5.47 84.66 0.46 0.00 16 8 N -0.96 -63.02 13.96 21.45 0.30 -62.72 16 9 Si 0.95 46.24 27.47 68.60 1.88 48.13 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 13 N -0.69 -25.60 5.77 -469.45 -2.71 -28.31 16 14 C 0.10 2.97 2.30 44.91 0.10 3.08 16 15 C -0.12 -2.85 5.19 30.59 0.16 -2.69 16 16 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 17 C -0.12 -2.50 5.92 30.60 0.18 -2.31 16 18 C -0.11 -2.94 5.92 30.61 0.18 -2.76 16 19 C -0.10 -3.65 5.41 30.61 0.17 -3.49 16 20 H 0.06 1.58 7.43 -2.38 -0.02 1.57 16 21 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.02 0.84 7.20 -2.38 -0.02 0.83 16 24 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 25 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.34 11.23 8.09 -89.69 -0.73 10.50 16 27 H 0.04 1.22 7.11 -2.39 -0.02 1.20 16 28 H 0.07 1.54 8.12 -2.39 -0.02 1.53 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.03 1.21 7.43 -2.39 -0.02 1.19 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -68.57 286.46 2.25 -66.32 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.23 Total: 15.79 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 2.55 Total: -39.21 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -2.41 Total: -91.02 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.88 Total: 48.13 kcal Total: -68.57 2.25 -66.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388652275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.345 kcal (2) G-P(sol) polarization free energy of solvation -68.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds