Wall clock time and date at job start Mon Mar 30 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47378 * 2 1 4 4 C 1.53007 * 109.47028 * 119.99752 * 2 1 3 5 5 H 1.08997 * 109.47254 * 56.33441 * 4 2 1 6 6 C 1.52998 * 109.46958 * 296.33563 * 4 2 1 7 7 N 1.46900 * 109.46815 * 176.33625 * 4 2 1 8 8 C 1.46903 * 110.99918 * 295.16538 * 7 4 2 9 9 C 1.50696 * 109.46711 * 160.38781 * 8 7 4 10 10 H 1.08004 * 120.00520 * 355.34696 * 9 8 7 11 11 C 1.37884 * 119.99898 * 175.35279 * 9 8 7 12 12 N 1.31517 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00044 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47366 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47317 * 120.00053 * 13 11 9 16 16 H 1.48499 * 109.47058 * 239.99892 * 13 11 9 17 17 C 1.46910 * 110.99573 * 171.21497 * 7 4 2 18 18 C 1.52997 * 117.49580 * 269.35328 * 17 7 4 19 19 C 1.52995 * 117.49507 * 200.73092 * 17 7 4 20 20 H 1.09000 * 109.46738 * 59.99853 * 1 2 3 21 21 H 1.09005 * 109.46777 * 300.00562 * 1 2 3 22 22 H 1.08992 * 109.47104 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47298 * 239.99733 * 2 1 3 24 24 H 1.08996 * 109.47252 * 173.95014 * 3 2 1 25 25 H 1.09005 * 109.46727 * 293.94638 * 3 2 1 26 26 H 1.08998 * 109.47475 * 53.93990 * 3 2 1 27 27 H 1.09004 * 109.47442 * 174.78539 * 6 4 2 28 28 H 1.09007 * 109.47167 * 294.78357 * 6 4 2 29 29 H 1.08997 * 109.47670 * 54.78245 * 6 4 2 30 30 H 1.08997 * 109.46839 * 280.38452 * 8 7 4 31 31 H 1.08996 * 109.46899 * 40.38800 * 8 7 4 32 32 H 0.96999 * 119.99876 * 180.02562 * 12 11 9 33 33 H 1.09002 * 115.55000 * 55.06223 * 17 7 4 34 34 H 1.09000 * 117.50001 * 0.02562 * 18 17 7 35 35 H 1.09002 * 117.49874 * 145.02469 * 18 17 7 36 36 H 1.08997 * 117.49898 * 214.97929 * 19 17 7 37 37 H 1.09003 * 117.50163 * 0.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6240 -1.7281 1.2829 6 6 1.6067 0.0514 2.4968 7 7 3.5063 -0.7983 1.2059 8 6 3.9566 -1.6312 0.0827 9 6 5.3960 -1.3147 -0.2318 10 1 5.9011 -0.5179 0.2939 11 6 6.0682 -2.0424 -1.1909 12 7 5.4533 -3.0130 -1.8308 13 14 7.8522 -1.6496 -1.5813 14 1 8.3087 -0.5220 -0.7297 15 1 8.6923 -2.8445 -1.3134 16 1 7.9738 -1.2698 -3.0117 17 6 4.0453 -1.2952 2.4790 18 6 4.3993 -0.2598 3.5483 19 6 5.5114 -0.9900 2.7926 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1247 1.4444 0.1083 25 1 1.7679 1.9241 -0.9393 26 1 1.5909 1.9868 0.8307 27 1 1.8891 -0.5093 3.3879 28 1 2.0967 1.0250 2.5097 29 1 0.5255 0.1890 2.4817 30 1 3.8665 -2.6836 0.3518 31 1 3.3399 -1.4257 -0.7922 32 1 5.9263 -3.5252 -2.5052 33 1 3.6470 -2.2520 2.8167 34 1 4.2320 0.7900 3.3074 35 1 4.2339 -0.5352 4.5899 36 1 6.0775 -1.7458 3.3369 37 1 6.0759 -0.4202 2.0545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388772237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:56 Heat of formation + Delta-G solvation = 18.763901 kcal Electronic energy + Delta-G solvation = -15021.182801 eV Core-core repulsion = 12799.109450 eV Total energy + Delta-G solvation = -2222.073351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.49302 -35.66029 -33.08282 -31.61035 -29.22057 -26.66774 -26.04938 -23.34016 -22.02017 -21.56239 -19.73118 -18.16125 -16.44788 -15.15993 -14.89610 -14.77165 -14.30048 -13.80240 -13.20913 -12.59616 -12.42440 -12.05811 -11.89515 -11.66764 -11.46266 -11.24852 -10.92327 -10.83233 -10.78691 -10.55620 -10.37108 -10.17867 -9.85148 -9.77998 -9.43996 -9.02534 -8.98451 -8.31987 -7.17839 -5.95287 -3.94368 3.33793 3.41463 3.45654 4.46091 4.63121 4.78073 5.36738 5.39197 5.42730 5.66700 5.69941 5.78011 5.79920 5.92062 5.96509 6.08734 6.17721 6.20005 6.25576 6.33680 6.39949 6.42222 6.47915 6.68457 6.74442 6.75135 6.95548 7.00979 7.05375 7.36014 7.47303 7.93544 8.22020 8.32493 8.64972 9.13173 9.68354 11.15528 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.010776 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.627252 B = 2597.804499 C = 3169.815800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.134 4.134 4 C 0.089 3.911 5 H 0.025 0.975 6 C -0.142 4.142 7 N -0.503 5.503 8 C 0.191 3.809 9 C -0.492 4.492 10 H 0.066 0.934 11 C 0.052 3.948 12 N -0.902 5.902 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.286 1.286 17 C 0.032 3.968 18 C -0.184 4.184 19 C -0.153 4.153 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.048 0.952 30 H -0.007 1.007 31 H 0.032 0.968 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 5.446 6.949 10.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.191 4.191 4 C -0.019 4.019 5 H 0.042 0.958 6 C -0.200 4.200 7 N -0.228 5.228 8 C 0.067 3.933 9 C -0.531 4.531 10 H 0.084 0.916 11 C -0.148 4.148 12 N -0.542 5.542 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.077 4.077 18 C -0.222 4.222 19 C -0.190 4.190 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.010 0.990 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.206 5.786 6.731 10.830 hybrid contribution 0.659 -0.906 -0.250 1.148 sum -5.547 4.880 6.481 9.828 Atomic orbital electron populations 1.21893 0.96309 1.01030 1.01053 1.21154 0.93878 0.97274 0.98622 1.21707 1.03058 0.94925 0.99439 1.21475 0.89494 0.96397 0.94573 0.95755 1.21962 0.99644 1.01044 0.97312 1.61973 1.05772 1.52976 1.02123 1.19773 0.96136 0.90037 0.87379 1.21268 0.96020 1.16388 1.19412 0.91562 1.24981 0.98117 0.95296 0.96440 1.69971 1.36660 1.21706 1.25907 0.86527 0.85236 0.78098 0.78068 1.19701 1.21289 1.21223 1.21958 0.98530 0.95273 0.91969 1.23029 1.05554 0.98300 0.95333 1.22980 0.91565 1.02516 1.01980 0.93152 0.92907 0.93320 0.90402 0.90693 0.94336 0.93822 0.93163 0.91933 0.93320 0.98957 0.95053 0.93204 0.91759 0.89036 0.90390 0.90238 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.93 37.16 0.33 -1.70 16 2 C -0.09 -1.56 2.61 -90.61 -0.24 -1.80 16 3 C -0.13 -2.20 8.50 37.16 0.32 -1.89 16 4 C 0.09 1.63 1.86 -67.71 -0.13 1.50 16 5 H 0.02 0.47 8.13 -51.93 -0.42 0.05 16 6 C -0.14 -2.16 7.31 37.16 0.27 -1.88 16 7 N -0.50 -10.66 3.72 -220.14 -0.82 -11.48 16 8 C 0.19 4.94 4.62 -4.98 -0.02 4.91 16 9 C -0.49 -13.57 8.21 -34.44 -0.28 -13.85 16 10 H 0.07 1.81 5.72 -52.48 -0.30 1.51 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.03 0.63 3.85 -67.71 -0.26 0.37 16 18 C -0.18 -3.03 8.69 -26.73 -0.23 -3.26 16 19 C -0.15 -2.91 9.48 -26.73 -0.25 -3.17 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.67 6.41 -51.93 -0.33 0.34 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.56 6.07 -51.93 -0.32 1.25 16 24 H 0.07 1.42 7.55 -51.93 -0.39 1.03 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.64 6.85 -51.93 -0.36 0.28 16 27 H 0.05 0.75 6.57 -51.93 -0.34 0.41 16 28 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 29 H 0.05 0.65 6.28 -51.93 -0.33 0.32 16 30 H -0.01 -0.21 8.00 -51.93 -0.42 -0.63 16 31 H 0.03 0.86 5.76 -51.93 -0.30 0.56 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.51 7.76 -51.93 -0.40 1.10 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.11 2.31 5.99 -51.93 -0.31 2.00 16 LS Contribution 282.07 15.07 4.25 4.25 Total: -1.00 -28.64 282.07 -7.66 -36.30 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.22 Total: -0.23 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -0.59 Total: -19.40 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.08 Total: -37.65 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.64 -7.66 -36.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388772237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.067 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds