Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47378 * 2 1 4 4 C 1.53007 * 109.47028 * 119.99752 * 2 1 3 5 5 H 1.08997 * 109.47254 * 56.33441 * 4 2 1 6 6 C 1.52998 * 109.46958 * 296.33563 * 4 2 1 7 7 N 1.46900 * 109.46815 * 176.33625 * 4 2 1 8 8 C 1.46903 * 110.99918 * 295.16538 * 7 4 2 9 9 C 1.50696 * 109.46711 * 160.38781 * 8 7 4 10 10 H 1.08004 * 120.00520 * 355.34696 * 9 8 7 11 11 C 1.37884 * 119.99898 * 175.35279 * 9 8 7 12 12 N 1.31517 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00044 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47366 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47317 * 120.00053 * 13 11 9 16 16 H 1.48499 * 109.47058 * 239.99892 * 13 11 9 17 17 C 1.46910 * 110.99573 * 171.21497 * 7 4 2 18 18 C 1.52997 * 117.49580 * 269.35328 * 17 7 4 19 19 C 1.52995 * 117.49507 * 200.73092 * 17 7 4 20 20 H 1.09000 * 109.46738 * 59.99853 * 1 2 3 21 21 H 1.09005 * 109.46777 * 300.00562 * 1 2 3 22 22 H 1.08992 * 109.47104 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47298 * 239.99733 * 2 1 3 24 24 H 1.08996 * 109.47252 * 173.95014 * 3 2 1 25 25 H 1.09005 * 109.46727 * 293.94638 * 3 2 1 26 26 H 1.08998 * 109.47475 * 53.93990 * 3 2 1 27 27 H 1.09004 * 109.47442 * 174.78539 * 6 4 2 28 28 H 1.09007 * 109.47167 * 294.78357 * 6 4 2 29 29 H 1.08997 * 109.47670 * 54.78245 * 6 4 2 30 30 H 1.08997 * 109.46839 * 280.38452 * 8 7 4 31 31 H 1.08996 * 109.46899 * 40.38800 * 8 7 4 32 32 H 0.96999 * 119.99876 * 180.02562 * 12 11 9 33 33 H 1.09002 * 115.55000 * 55.06223 * 17 7 4 34 34 H 1.09000 * 117.50001 * 0.02562 * 18 17 7 35 35 H 1.09002 * 117.49874 * 145.02469 * 18 17 7 36 36 H 1.08997 * 117.49898 * 214.97929 * 19 17 7 37 37 H 1.09003 * 117.50163 * 0.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6240 -1.7281 1.2829 6 6 1.6067 0.0514 2.4968 7 7 3.5063 -0.7983 1.2059 8 6 3.9566 -1.6312 0.0827 9 6 5.3960 -1.3147 -0.2318 10 1 5.9011 -0.5179 0.2939 11 6 6.0682 -2.0424 -1.1909 12 7 5.4533 -3.0130 -1.8308 13 14 7.8522 -1.6496 -1.5813 14 1 8.3087 -0.5220 -0.7297 15 1 8.6923 -2.8445 -1.3134 16 1 7.9738 -1.2698 -3.0117 17 6 4.0453 -1.2952 2.4790 18 6 4.3993 -0.2598 3.5483 19 6 5.5114 -0.9900 2.7926 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1247 1.4444 0.1083 25 1 1.7679 1.9241 -0.9393 26 1 1.5909 1.9868 0.8307 27 1 1.8891 -0.5093 3.3879 28 1 2.0967 1.0250 2.5097 29 1 0.5255 0.1890 2.4817 30 1 3.8665 -2.6836 0.3518 31 1 3.3399 -1.4257 -0.7922 32 1 5.9263 -3.5252 -2.5052 33 1 3.6470 -2.2520 2.8167 34 1 4.2320 0.7900 3.3074 35 1 4.2339 -0.5352 4.5899 36 1 6.0775 -1.7458 3.3369 37 1 6.0759 -0.4202 2.0545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388772237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = 2.073029 kcal Electronic energy + Delta-G solvation = -15021.906572 eV Core-core repulsion = 12799.109450 eV Total energy + Delta-G solvation = -2222.797121 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03876 -37.08343 -35.11951 -33.33558 -30.77169 -28.05928 -27.82924 -24.74490 -24.02395 -22.99914 -21.28779 -19.64668 -18.50977 -16.76923 -16.63642 -16.39865 -15.88569 -15.42976 -14.57600 -14.42589 -13.74876 -13.61660 -13.54928 -13.36678 -12.91184 -12.78138 -12.59786 -12.44750 -12.35017 -12.10988 -11.76069 -11.69535 -11.62494 -11.21095 -11.19242 -10.84785 -10.59968 -10.43360 -8.94568 -8.14045 -6.21071 1.39654 1.40451 1.53424 2.42137 3.10307 3.17693 3.23885 4.01110 4.07159 4.20851 4.30912 4.33071 4.49082 4.59626 4.68025 4.71586 4.85676 4.91088 4.92739 4.98610 5.12243 5.12624 5.15594 5.20450 5.29566 5.32979 5.41785 5.45617 5.50884 5.65478 5.67852 5.79839 6.17296 6.51625 6.76097 6.95907 7.46863 8.96979 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.010776 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.627252 B = 2597.804499 C = 3169.815800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.126 4.126 4 C 0.084 3.916 5 H 0.006 0.994 6 C -0.131 4.131 7 N -0.502 5.502 8 C 0.209 3.791 9 C -0.498 4.498 10 H 0.068 0.932 11 C -0.003 4.003 12 N -0.941 5.941 13 Si 0.961 3.039 14 H -0.261 1.261 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.002 3.998 18 C -0.138 4.138 19 C -0.169 4.169 20 H 0.061 0.939 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.036 0.964 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.074 0.926 30 H -0.048 1.048 31 H 0.008 0.992 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 7.195 8.626 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.183 4.183 4 C -0.025 4.025 5 H 0.024 0.976 6 C -0.188 4.188 7 N -0.227 5.227 8 C 0.083 3.917 9 C -0.536 4.536 10 H 0.086 0.914 11 C -0.200 4.200 12 N -0.583 5.583 13 Si 0.787 3.213 14 H -0.185 1.185 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.107 4.107 18 C -0.175 4.175 19 C -0.206 4.206 20 H 0.081 0.919 21 H 0.094 0.906 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.093 0.907 30 H -0.031 1.031 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.511 7.554 8.429 13.058 hybrid contribution 0.705 -1.468 -0.757 1.796 sum -5.806 6.085 7.672 11.385 Atomic orbital electron populations 1.21824 0.93326 1.01504 1.02793 1.21144 0.96371 0.97264 0.96373 1.21620 1.01075 0.94548 1.01073 1.21655 0.87516 0.96274 0.97008 0.97636 1.21877 1.01252 1.00419 0.95259 1.61938 1.07903 1.51210 1.01600 1.19389 0.95457 0.88347 0.88531 1.21557 0.96821 1.16125 1.19144 0.91385 1.25869 1.02679 0.95127 0.96334 1.70112 1.38579 1.22917 1.26665 0.85444 0.79733 0.78194 0.77943 1.18518 1.20825 1.20800 1.22079 0.99290 0.96766 0.92544 1.23061 1.01169 0.97469 0.95806 1.22957 0.91463 1.03533 1.02644 0.91948 0.90570 0.93547 0.94596 0.93779 0.93400 0.91193 0.92678 0.91520 0.90746 1.03072 0.97408 0.93119 0.92436 0.88465 0.86963 0.89024 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.93 71.98 0.64 -2.94 16 2 C -0.09 -3.20 2.61 -10.79 -0.03 -3.22 16 3 C -0.13 -3.99 8.50 71.98 0.61 -3.38 16 4 C 0.08 3.05 1.86 44.92 0.08 3.13 16 5 H 0.01 0.22 8.13 -2.39 -0.02 0.20 16 6 C -0.13 -3.59 7.31 71.98 0.53 -3.06 16 7 N -0.50 -21.70 3.72 -850.40 -3.16 -24.86 16 8 C 0.21 11.36 4.62 85.56 0.40 11.76 16 9 C -0.50 -28.35 8.21 25.60 0.21 -28.14 16 10 H 0.07 3.79 5.72 -2.91 -0.02 3.77 16 11 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 12 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 13 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 C 0.00 0.09 3.85 44.91 0.17 0.26 16 18 C -0.14 -4.13 8.69 30.59 0.27 -3.86 16 19 C -0.17 -6.28 9.48 30.59 0.29 -5.99 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.08 1.65 6.41 -2.38 -0.02 1.63 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 23 H 0.04 1.52 6.07 -2.39 -0.01 1.51 16 24 H 0.04 1.66 7.55 -2.39 -0.02 1.64 16 25 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.07 1.83 6.85 -2.39 -0.02 1.82 16 27 H 0.05 1.46 6.57 -2.38 -0.02 1.45 16 28 H 0.07 1.79 6.43 -2.38 -0.02 1.78 16 29 H 0.07 1.68 6.28 -2.39 -0.02 1.66 16 30 H -0.05 -2.97 8.00 -2.39 -0.02 -2.99 16 31 H 0.01 0.47 5.76 -2.39 -0.01 0.45 16 32 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.10 2.86 7.76 -2.39 -0.02 2.84 16 35 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.08 3.56 5.99 -2.39 -0.01 3.55 16 Total: -1.00 -64.27 282.07 3.81 -60.46 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.02 Total: 10.11 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 3.63 Total: -35.19 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.88 Total: -82.69 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -64.27 3.81 -60.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388772237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.533 kcal (2) G-P(sol) polarization free energy of solvation -64.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds