Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46982 * 2 1 4 4 N 1.46497 * 109.47146 * 119.99791 * 2 1 3 5 5 C 1.36941 * 119.99906 * 122.93063 * 4 2 1 6 6 H 1.08001 * 119.99965 * 208.84380 * 5 4 2 7 7 C 1.38815 * 119.99995 * 28.84272 * 5 4 2 8 8 N 1.31619 * 119.99723 * 19.13935 * 7 5 4 9 9 Si 1.86797 * 120.00355 * 199.13153 * 7 5 4 10 10 H 1.48501 * 109.47090 * 60.00125 * 9 7 5 11 11 H 1.48496 * 109.47144 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47077 * 300.00400 * 9 7 5 13 13 C 1.46496 * 120.00330 * 302.93180 * 4 2 1 14 14 C 1.52998 * 109.47122 * 270.00258 * 13 4 2 15 15 C 1.53001 * 109.47041 * 180.02562 * 14 13 4 16 16 C 1.53788 * 113.61133 * 274.13543 * 15 14 13 17 17 C 1.53957 * 87.01859 * 220.04858 * 16 15 14 18 18 C 1.53777 * 113.61456 * 176.53143 * 15 14 13 19 19 H 1.08999 * 109.47384 * 299.99880 * 1 2 3 20 20 H 1.08997 * 109.47468 * 60.00516 * 1 2 3 21 21 H 1.09008 * 109.46925 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46824 * 239.99723 * 2 1 3 23 23 H 1.09009 * 109.47275 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46973 * 299.99747 * 3 2 1 25 25 H 1.08997 * 109.47475 * 59.99882 * 3 2 1 26 26 H 0.97003 * 120.00299 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47062 * 30.00044 * 13 4 2 28 28 H 1.09001 * 109.47208 * 149.99590 * 13 4 2 29 29 H 1.08998 * 109.46977 * 299.99838 * 14 13 4 30 30 H 1.08993 * 109.47394 * 59.99775 * 14 13 4 31 31 H 1.09001 * 112.85493 * 45.32673 * 15 14 13 32 32 H 1.08999 * 113.61454 * 334.56627 * 16 15 14 33 33 H 1.08997 * 113.61524 * 105.47195 * 16 15 14 34 34 H 1.08997 * 113.53614 * 270.81410 * 17 16 15 35 35 H 1.09000 * 113.66737 * 139.92853 * 17 16 15 36 36 H 1.09010 * 113.61191 * 254.52747 * 18 15 14 37 37 H 1.09000 * 113.61779 * 25.34021 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8544 -1.7679 1.0714 6 1 2.8536 -2.5421 1.8245 7 6 3.7030 -1.8649 -0.0229 8 7 3.9910 -0.7924 -0.7294 9 14 4.4362 -3.5175 -0.4927 10 1 3.3432 -4.4745 -0.8003 11 1 5.3019 -3.3531 -1.6880 12 1 5.2469 -4.0385 0.6372 13 6 1.6123 -0.2286 2.5258 14 6 2.6124 0.8131 3.0312 15 6 2.1886 1.2951 4.4201 16 6 1.1713 2.4480 4.3882 17 6 1.9506 3.0614 5.5658 18 6 3.1772 2.2863 5.0564 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1301 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 4.5842 -0.8601 -1.4939 27 1 0.6200 0.2186 2.4677 28 1 1.5899 -1.0743 3.2131 29 1 3.6047 0.3659 3.0893 30 1 2.6347 1.6588 2.3439 31 1 1.9021 0.4782 5.0825 32 1 1.2159 3.0446 3.4771 33 1 0.1573 2.1427 4.6463 34 1 1.5980 2.7281 6.5418 35 1 2.0605 4.1439 5.5012 36 1 3.7803 1.8507 5.8531 37 1 3.7724 2.8375 4.3283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398631547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = 9.077283 kcal Electronic energy + Delta-G solvation = -14861.190316 eV Core-core repulsion = 12638.696922 eV Total energy + Delta-G solvation = -2222.493394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85267 -38.19819 -33.86650 -33.07344 -30.56556 -27.70425 -26.67509 -26.29101 -24.60489 -22.34718 -20.83488 -20.18292 -18.59388 -16.70845 -16.41078 -16.03334 -15.71385 -15.15204 -14.45439 -14.28749 -14.02843 -13.49167 -13.34340 -13.24601 -12.95702 -12.85030 -12.73522 -12.55172 -12.29635 -11.99852 -11.93856 -11.61271 -11.41410 -11.26279 -11.08979 -10.86448 -10.79744 -10.37195 -8.54063 -7.80145 -5.23421 1.46872 1.48870 1.55211 2.55180 3.32483 3.67576 3.84976 3.89719 4.01470 4.09182 4.44117 4.57289 4.70998 4.76633 4.84554 4.89529 4.93591 4.98100 4.99103 5.02989 5.04769 5.13919 5.15293 5.16123 5.24625 5.37801 5.39287 5.55419 5.62558 5.73015 5.78006 5.86521 6.05662 6.50420 7.26610 8.00976 8.47153 9.23793 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034339 B = 0.008945 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.195410 B = 3129.412878 C = 3515.207081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.176 3.824 3 C -0.130 4.130 4 N -0.601 5.601 5 C -0.264 4.264 6 H 0.056 0.944 7 C -0.043 4.043 8 N -0.917 5.917 9 Si 0.956 3.044 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.150 3.850 14 C -0.116 4.116 15 C -0.112 4.112 16 C -0.133 4.133 17 C -0.129 4.129 18 C -0.142 4.142 19 H 0.054 0.946 20 H 0.059 0.941 21 H 0.038 0.962 22 H 0.056 0.944 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.246 0.754 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 6.218 8.236 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 C -0.189 4.189 4 N -0.323 5.323 5 C -0.394 4.394 6 H 0.074 0.926 7 C -0.240 4.240 8 N -0.562 5.562 9 Si 0.785 3.215 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.025 3.975 14 C -0.156 4.156 15 C -0.131 4.131 16 C -0.171 4.171 17 C -0.166 4.166 18 C -0.180 4.180 19 H 0.073 0.927 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.677 6.217 8.095 11.680 hybrid contribution 0.919 -0.950 -0.607 1.455 sum -4.758 5.267 7.488 10.318 Atomic orbital electron populations 1.22193 0.97440 1.00368 1.01047 1.20211 0.90541 0.91877 0.90385 1.22033 1.00711 0.97417 0.98764 1.44221 1.53654 1.33665 1.00727 1.19347 1.14247 0.97935 1.07913 0.92615 1.25631 0.97976 0.99404 1.00945 1.70182 1.37819 1.27499 1.20690 0.85531 0.77817 0.81058 0.77133 1.20832 1.22050 1.20677 1.20895 0.95887 0.94662 0.86093 1.22118 0.98858 0.99094 0.95500 1.22570 0.97748 0.96751 0.96019 1.22957 0.98264 0.97051 0.98816 1.22800 0.95762 0.99771 0.98289 1.22942 0.96873 0.98200 0.99960 0.92719 0.92183 0.94315 0.92626 0.94560 0.94089 0.93785 0.94447 0.92741 0.94927 0.95864 0.93076 0.89489 0.91060 0.90867 0.89067 0.90858 0.91481 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.82 9.12 71.98 0.66 -5.16 16 2 C 0.18 8.33 2.39 44.99 0.11 8.44 16 3 C -0.13 -5.75 8.15 71.98 0.59 -5.17 16 4 N -0.60 -30.07 2.42 -678.04 -1.64 -31.71 16 5 C -0.26 -14.71 9.57 84.03 0.80 -13.91 16 6 H 0.06 3.10 7.90 -2.91 -0.02 3.08 16 7 C -0.04 -2.43 4.83 84.86 0.41 -2.02 16 8 N -0.92 -53.47 10.31 21.65 0.22 -53.25 16 9 Si 0.96 45.59 29.60 68.60 2.03 47.62 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.15 6.28 5.16 86.38 0.45 6.73 16 14 C -0.12 -4.53 5.09 30.59 0.16 -4.37 16 15 C -0.11 -3.32 3.64 -10.27 -0.04 -3.36 16 16 C -0.13 -3.33 7.65 31.18 0.24 -3.10 16 17 C -0.13 -2.75 8.09 31.18 0.25 -2.50 16 18 C -0.14 -3.74 7.64 31.12 0.24 -3.50 16 19 H 0.05 1.90 6.57 -2.39 -0.02 1.89 16 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 22 H 0.06 3.07 5.89 -2.38 -0.01 3.05 16 23 H 0.04 1.84 7.29 -2.38 -0.02 1.82 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.76 6.07 -2.39 -0.01 1.74 16 26 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.05 2.06 6.28 -2.39 -0.01 2.04 16 28 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 2.09 5.15 -2.39 -0.01 2.08 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 Total: -1.00 -59.96 285.76 5.48 -54.48 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.01 Total: 10.77 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.86 Total: -27.92 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.41 Total: -84.96 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -59.96 5.48 -54.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398631547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.559 kcal (2) G-P(sol) polarization free energy of solvation -59.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds