Wall clock time and date at job start Mon Mar 30 2020 02:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47372 * 2 1 4 4 N 1.46503 * 109.47194 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99744 * 269.99961 * 4 3 2 6 6 H 1.08000 * 120.00064 * 326.21175 * 5 4 3 7 7 C 1.38812 * 119.99887 * 146.21941 * 5 4 3 8 8 N 1.31624 * 119.99752 * 337.68033 * 7 5 4 9 9 Si 1.86795 * 120.00391 * 157.68787 * 7 5 4 10 10 H 1.48505 * 109.47139 * 59.99677 * 9 7 5 11 11 H 1.48494 * 109.47348 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47164 * 299.99821 * 9 7 5 13 13 C 1.46496 * 119.99966 * 90.00188 * 4 3 2 14 14 C 1.53004 * 109.47315 * 85.78397 * 13 4 3 15 15 C 1.53001 * 109.47111 * 179.97438 * 14 13 4 16 16 C 1.53779 * 113.61358 * 274.13465 * 15 14 13 17 17 C 1.53951 * 87.02090 * 220.04911 * 16 15 14 18 18 C 1.53777 * 113.61202 * 176.53123 * 15 14 13 19 19 H 1.08998 * 109.47783 * 59.99904 * 1 2 3 20 20 H 1.09005 * 109.47450 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46728 * 299.99510 * 1 2 3 22 22 H 1.09003 * 109.47292 * 239.99975 * 2 1 3 23 23 H 1.09007 * 109.47531 * 120.00629 * 2 1 3 24 24 H 1.08998 * 109.47132 * 60.00203 * 3 2 1 25 25 H 1.09004 * 109.46990 * 300.00073 * 3 2 1 26 26 H 0.96996 * 119.99600 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47133 * 205.78568 * 13 4 3 28 28 H 1.09001 * 109.47339 * 325.78583 * 13 4 3 29 29 H 1.09001 * 109.47159 * 300.00155 * 14 13 4 30 30 H 1.09001 * 109.46765 * 59.99834 * 14 13 4 31 31 H 1.08995 * 112.85039 * 45.33506 * 15 14 13 32 32 H 1.09001 * 113.62022 * 334.57118 * 16 15 14 33 33 H 1.09003 * 113.60889 * 105.47376 * 16 15 14 34 34 H 1.09000 * 113.54161 * 270.81241 * 17 16 15 35 35 H 1.09003 * 113.66527 * 139.93453 * 17 16 15 36 36 H 1.09001 * 113.61581 * 254.53300 * 18 15 14 37 37 H 1.09000 * 113.61539 * 25.34797 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.4422 1.1850 6 1 3.7873 1.9622 2.0416 7 6 5.4025 0.7737 1.2859 8 7 5.6913 -0.1960 0.4441 9 14 6.6240 1.2502 2.6164 10 1 5.9997 1.0645 3.9510 11 1 7.8308 0.3913 2.5111 12 1 7.0122 2.6733 2.4453 13 6 4.2370 1.4426 -1.2696 14 6 4.4000 2.8813 -1.7642 15 6 5.1650 2.8815 -3.0892 16 6 6.6932 2.8836 -2.9182 17 6 6.7433 3.8722 -4.0973 18 6 5.3096 4.2780 -3.7167 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 6.5387 -0.6629 0.5144 27 1 5.2200 0.9955 -1.1221 28 1 3.6824 0.8649 -2.0091 29 1 3.4169 3.3284 -1.9117 30 1 4.9546 3.4590 -1.0247 31 1 4.8046 2.1249 -3.7861 32 1 7.0264 3.3135 -1.9735 33 1 7.1580 1.9215 -3.1339 34 1 6.8159 3.3862 -5.0702 35 1 7.4725 4.6719 -3.9671 36 1 4.6590 4.4401 -4.5761 37 1 5.2623 5.0898 -2.9909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398635938.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:07 Heat of formation + Delta-G solvation = 0.255499 kcal Electronic energy + Delta-G solvation = -14557.232096 eV Core-core repulsion = 12334.356161 eV Total energy + Delta-G solvation = -2222.875935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79084 -37.85469 -34.63023 -33.12656 -31.15108 -27.30640 -26.63593 -26.21304 -23.80659 -22.53779 -21.33453 -20.18733 -18.58822 -16.88258 -16.32881 -16.05875 -15.91185 -15.35092 -14.75281 -14.39465 -14.31396 -13.77548 -13.27621 -13.22020 -12.97990 -12.71127 -12.61356 -12.50272 -12.19899 -12.16014 -11.95129 -11.76636 -11.50029 -11.34997 -11.28931 -10.89681 -10.84138 -10.46247 -8.55577 -7.79646 -5.36317 1.44390 1.46964 1.53421 2.52028 3.25659 3.65140 3.83679 3.89052 4.00345 4.09005 4.25958 4.42856 4.58146 4.67117 4.76087 4.82112 4.84098 4.92799 4.93809 4.97900 5.04265 5.08407 5.12815 5.18214 5.24170 5.27062 5.44925 5.51210 5.52506 5.60692 5.69797 5.76067 5.96809 6.49319 7.20181 7.92701 8.42847 9.16826 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.011991 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.559941 B = 2334.453336 C = 3547.705542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.145 3.855 4 N -0.606 5.606 5 C -0.264 4.264 6 H 0.054 0.946 7 C -0.038 4.038 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.280 1.280 13 C 0.149 3.851 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.144 4.144 17 C -0.128 4.128 18 C -0.129 4.129 19 H 0.062 0.938 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.033 0.967 23 H 0.028 0.972 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.250 0.750 27 H 0.070 0.930 28 H 0.013 0.987 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 6.123 -7.300 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.019 3.981 4 N -0.326 5.326 5 C -0.395 4.395 6 H 0.072 0.928 7 C -0.235 4.235 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.023 3.977 14 C -0.147 4.147 15 C -0.128 4.128 16 C -0.181 4.181 17 C -0.165 4.165 18 C -0.166 4.166 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.712 6.020 -7.296 9.840 hybrid contribution 0.813 -0.286 0.945 1.279 sum -1.899 5.734 -6.351 8.765 Atomic orbital electron populations 1.21655 0.93991 1.01685 1.02050 1.21946 0.96294 0.99522 0.99492 1.21041 0.83934 0.94220 0.98884 1.44180 1.00771 1.85418 1.02279 1.19250 1.03319 1.25534 0.91349 0.92813 1.25690 1.02076 0.95489 1.00237 1.70119 1.23464 1.21700 1.40825 0.85580 0.78877 0.77659 0.79842 1.20203 1.21836 1.20652 1.20863 0.98361 0.93595 0.84909 1.21899 0.98598 0.98908 0.95320 1.22504 0.95301 0.98447 0.96580 1.22960 0.96669 0.99664 0.98846 1.22811 0.97103 0.98677 0.97950 1.22888 0.97322 0.95984 1.00429 0.91854 0.92547 0.92412 0.94814 0.95280 0.94097 0.93096 0.94112 0.91222 0.96848 0.93369 0.94679 0.89693 0.92063 0.92720 0.89048 0.90762 0.90282 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.36 16 2 C -0.13 -5.40 6.26 30.59 0.19 -5.21 16 3 C 0.14 6.25 5.69 86.38 0.49 6.74 16 4 N -0.61 -31.13 2.45 -702.00 -1.72 -32.85 16 5 C -0.26 -14.86 9.49 84.03 0.80 -14.07 16 6 H 0.05 3.02 7.92 -2.91 -0.02 3.00 16 7 C -0.04 -2.15 4.93 84.86 0.42 -1.74 16 8 N -0.92 -54.45 11.32 21.65 0.25 -54.21 16 9 Si 0.95 45.53 29.61 68.60 2.03 47.56 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.15 7.22 5.25 86.38 0.45 7.67 16 14 C -0.11 -4.35 5.36 30.60 0.16 -4.18 16 15 C -0.11 -3.61 3.64 -10.27 -0.04 -3.65 16 16 C -0.14 -4.70 7.65 31.18 0.24 -4.46 16 17 C -0.13 -3.16 8.09 31.18 0.25 -2.91 16 18 C -0.13 -3.37 7.65 31.12 0.24 -3.13 16 19 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 20 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 25 H 0.05 1.98 8.07 -2.38 -0.02 1.96 16 26 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.07 3.88 5.32 -2.39 -0.01 3.86 16 28 H 0.01 0.63 8.10 -2.39 -0.02 0.61 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.55 7.87 -2.39 -0.02 1.53 16 31 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.06 2.20 7.92 -2.39 -0.02 2.18 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -61.42 297.82 5.46 -55.96 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.99 Total: 11.85 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 3.92 Total: -28.30 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.48 Total: -87.06 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -61.42 5.46 -55.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398635938.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.212 kcal (2) G-P(sol) polarization free energy of solvation -61.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds