Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 N 1.46496 * 109.47097 * 120.00302 * 2 1 3 5 5 C 1.36933 * 120.00268 * 125.61675 * 4 2 1 6 6 H 1.07997 * 120.00077 * 154.57951 * 5 4 2 7 7 C 1.38812 * 119.99871 * 334.57962 * 5 4 2 8 8 N 1.31616 * 120.00228 * 145.42737 * 7 5 4 9 9 Si 1.86806 * 119.99949 * 325.42296 * 7 5 4 10 10 H 1.48509 * 109.46890 * 88.76464 * 9 7 5 11 11 H 1.48499 * 109.47275 * 208.76392 * 9 7 5 12 12 H 1.48500 * 109.47117 * 328.76816 * 9 7 5 13 13 C 1.46501 * 119.99885 * 305.61335 * 4 2 1 14 14 C 1.53001 * 109.47562 * 270.00214 * 13 4 2 15 15 C 1.52995 * 109.47279 * 179.97438 * 14 13 4 16 16 C 1.53002 * 109.46998 * 179.97438 * 15 14 13 17 17 C 1.53001 * 117.50280 * 243.74989 * 16 15 14 18 18 C 1.52997 * 117.49770 * 175.08826 * 16 15 14 19 19 H 1.08997 * 109.47230 * 299.99706 * 1 2 3 20 20 H 1.09004 * 109.47118 * 59.99884 * 1 2 3 21 21 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46832 * 240.00160 * 2 1 3 23 23 H 1.09001 * 109.47078 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47291 * 300.00009 * 3 2 1 25 25 H 1.09004 * 109.46823 * 59.99720 * 3 2 1 26 26 H 0.97000 * 120.00136 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.47369 * 150.00011 * 13 4 2 28 28 H 1.09004 * 109.47184 * 30.00008 * 13 4 2 29 29 H 1.09002 * 109.46881 * 300.00594 * 14 13 4 30 30 H 1.09003 * 109.46945 * 59.99537 * 14 13 4 31 31 H 1.08995 * 109.47331 * 299.99830 * 15 14 13 32 32 H 1.09004 * 109.46915 * 60.00370 * 15 14 13 33 33 H 1.09000 * 115.54953 * 29.42179 * 16 15 14 34 34 H 1.08997 * 117.49374 * 0.02562 * 17 16 15 35 35 H 1.09000 * 117.50074 * 145.02160 * 17 16 15 36 36 H 1.09008 * 117.49655 * 214.97842 * 18 16 15 37 37 H 1.08992 * 117.49859 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8977 -1.7332 1.0738 6 1 3.5641 -1.9760 1.8882 7 6 2.9325 -2.4780 -0.0971 8 7 4.0752 -2.9626 -0.5351 9 14 1.3576 -2.7926 -1.0512 10 1 1.1380 -1.6900 -2.0215 11 1 1.4705 -4.0802 -1.7823 12 1 0.2122 -2.8575 -0.1082 13 6 1.5660 -0.2659 2.5232 14 6 2.5140 0.8049 3.0668 15 6 2.0411 1.2489 4.4524 16 6 2.9896 2.3193 4.9962 17 6 3.7841 1.9833 6.2599 18 6 2.6225 2.9780 6.3274 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 4.0994 -3.4834 -1.3531 27 1 1.5611 -1.1227 3.1970 28 1 0.5587 0.1442 2.4497 29 1 3.5213 0.3949 3.1402 30 1 2.5188 1.6618 2.3930 31 1 1.0340 1.6591 4.3785 32 1 2.0361 0.3922 5.1264 33 1 3.4778 2.9403 4.2451 34 1 3.6313 0.9995 6.7036 35 1 4.7947 2.3835 6.3403 36 1 2.8697 4.0323 6.4523 37 1 1.7056 2.6485 6.8160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000406042130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = 34.664019 kcal Electronic energy + Delta-G solvation = -14566.075154 eV Core-core repulsion = 12344.691284 eV Total energy + Delta-G solvation = -2221.383870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.80163 -36.85346 -32.72702 -32.09165 -29.85712 -26.53070 -26.20465 -23.02952 -22.31782 -21.13732 -20.19224 -19.33632 -16.83416 -15.53848 -15.34875 -14.42146 -14.25389 -13.73792 -13.33236 -13.03323 -12.84113 -11.99113 -11.88406 -11.78790 -11.62496 -11.46067 -11.38458 -11.02969 -10.82668 -10.59756 -10.50411 -10.12370 -10.00182 -9.82201 -9.58188 -9.56273 -9.21309 -8.37197 -6.91551 -5.97341 -3.15892 3.39157 3.54864 3.58029 3.90046 4.60492 4.74460 4.97840 5.04319 5.08975 5.39089 5.52312 5.65005 5.69404 5.79155 5.85543 5.92747 6.02195 6.11940 6.15319 6.21388 6.26682 6.31021 6.34135 6.46757 6.51440 6.57599 6.62653 6.67651 6.93174 7.03881 7.14063 7.20152 8.05832 8.38216 9.06832 9.82420 10.21192 11.18028 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040685 B = 0.007871 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.057397 B = 3556.691869 C = 3875.205421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.149 3.851 3 C -0.159 4.159 4 N -0.597 5.597 5 C -0.265 4.265 6 H 0.081 0.919 7 C 0.032 3.968 8 N -0.887 5.887 9 Si 0.854 3.146 10 H -0.284 1.284 11 H -0.305 1.305 12 H -0.271 1.271 13 C 0.147 3.853 14 C -0.139 4.139 15 C -0.088 4.088 16 C -0.144 4.144 17 C -0.182 4.182 18 C -0.189 4.189 19 H 0.052 0.948 20 H 0.046 0.954 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.261 0.739 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 10.046 7.967 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.042 3.958 3 C -0.218 4.218 4 N -0.319 5.319 5 C -0.392 4.392 6 H 0.099 0.901 7 C -0.168 4.168 8 N -0.529 5.529 9 Si 0.683 3.317 10 H -0.211 1.211 11 H -0.233 1.233 12 H -0.197 1.197 13 C 0.021 3.979 14 C -0.179 4.179 15 C -0.126 4.126 16 C -0.162 4.162 17 C -0.219 4.219 18 C -0.226 4.226 19 H 0.071 0.929 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.757 9.908 7.857 13.510 hybrid contribution -0.817 -0.254 -0.597 1.043 sum -5.574 9.655 7.260 13.304 Atomic orbital electron populations 1.22469 0.98864 1.01632 1.00430 1.20701 0.91363 0.92193 0.91517 1.22378 1.01629 0.98105 0.99682 1.44236 1.52753 1.35225 0.99644 1.18793 1.10880 1.06911 1.02641 0.90092 1.25181 0.96279 0.98465 0.96867 1.70077 1.23809 1.37273 1.21695 0.87462 0.87724 0.76623 0.79890 1.21121 1.23302 1.19708 1.20813 0.94475 0.95472 0.87146 1.22325 1.01419 1.00100 0.94013 1.21183 0.97354 0.96237 0.97796 1.22420 1.01961 1.01264 0.90587 1.23011 0.96105 1.00258 1.02571 1.22957 0.99640 0.97948 1.02025 0.92926 0.93509 0.92676 0.90249 0.92563 0.94260 0.93197 0.92911 0.93267 0.94468 0.91923 0.92088 0.92296 0.92288 0.88067 0.88895 0.89264 0.89353 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 8.43 37.16 0.31 -3.10 16 2 C 0.15 3.29 2.20 -67.93 -0.15 3.14 16 3 C -0.16 -3.00 8.48 37.16 0.32 -2.69 16 4 N -0.60 -14.19 2.19 -165.66 -0.36 -14.55 16 5 C -0.26 -7.41 9.90 -15.06 -0.15 -7.56 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.03 0.93 4.95 -17.43 -0.09 0.84 16 8 N -0.89 -27.20 13.97 55.49 0.78 -26.42 16 9 Si 0.85 22.10 23.78 -169.99 -4.04 18.05 16 10 H -0.28 -7.08 6.39 56.52 0.36 -6.72 16 11 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 12 H -0.27 -6.93 6.21 56.52 0.35 -6.58 16 13 C 0.15 2.91 5.23 -4.04 -0.02 2.89 16 14 C -0.14 -2.41 5.24 -26.73 -0.14 -2.55 16 15 C -0.09 -1.24 5.50 -26.73 -0.15 -1.38 16 16 C -0.14 -1.85 5.73 -90.62 -0.52 -2.37 16 17 C -0.18 -2.14 10.18 -26.69 -0.27 -2.41 16 18 C -0.19 -2.07 10.25 -26.69 -0.27 -2.34 16 19 H 0.05 0.92 6.51 -51.93 -0.34 0.58 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 1.16 5.40 -51.93 -0.28 0.88 16 22 H 0.08 1.99 4.02 -51.93 -0.21 1.78 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 28 H 0.04 0.68 6.15 -51.93 -0.32 0.36 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.06 5.42 -51.93 -0.28 0.77 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.10 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 282.75 15.07 4.26 4.26 Total: -1.00 -29.47 282.75 -6.93 -36.40 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.43 Total: -0.22 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.13 Total: -17.53 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.41 Total: -40.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.04 Total: 18.05 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.47 -6.93 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406042130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.067 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds