Wall clock time and date at job start Mon Mar 30 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 N 1.46496 * 109.47097 * 120.00302 * 2 1 3 5 5 C 1.36933 * 120.00268 * 125.61675 * 4 2 1 6 6 H 1.07997 * 120.00077 * 154.57951 * 5 4 2 7 7 C 1.38812 * 119.99871 * 334.57962 * 5 4 2 8 8 N 1.31616 * 120.00228 * 145.42737 * 7 5 4 9 9 Si 1.86806 * 119.99949 * 325.42296 * 7 5 4 10 10 H 1.48509 * 109.46890 * 88.76464 * 9 7 5 11 11 H 1.48499 * 109.47275 * 208.76392 * 9 7 5 12 12 H 1.48500 * 109.47117 * 328.76816 * 9 7 5 13 13 C 1.46501 * 119.99885 * 305.61335 * 4 2 1 14 14 C 1.53001 * 109.47562 * 270.00214 * 13 4 2 15 15 C 1.52995 * 109.47279 * 179.97438 * 14 13 4 16 16 C 1.53002 * 109.46998 * 179.97438 * 15 14 13 17 17 C 1.53001 * 117.50280 * 243.74989 * 16 15 14 18 18 C 1.52997 * 117.49770 * 175.08826 * 16 15 14 19 19 H 1.08997 * 109.47230 * 299.99706 * 1 2 3 20 20 H 1.09004 * 109.47118 * 59.99884 * 1 2 3 21 21 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46832 * 240.00160 * 2 1 3 23 23 H 1.09001 * 109.47078 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47291 * 300.00009 * 3 2 1 25 25 H 1.09004 * 109.46823 * 59.99720 * 3 2 1 26 26 H 0.97000 * 120.00136 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.47369 * 150.00011 * 13 4 2 28 28 H 1.09004 * 109.47184 * 30.00008 * 13 4 2 29 29 H 1.09002 * 109.46881 * 300.00594 * 14 13 4 30 30 H 1.09003 * 109.46945 * 59.99537 * 14 13 4 31 31 H 1.08995 * 109.47331 * 299.99830 * 15 14 13 32 32 H 1.09004 * 109.46915 * 60.00370 * 15 14 13 33 33 H 1.09000 * 115.54953 * 29.42179 * 16 15 14 34 34 H 1.08997 * 117.49374 * 0.02562 * 17 16 15 35 35 H 1.09000 * 117.50074 * 145.02160 * 17 16 15 36 36 H 1.09008 * 117.49655 * 214.97842 * 18 16 15 37 37 H 1.08992 * 117.49859 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8977 -1.7332 1.0738 6 1 3.5641 -1.9760 1.8882 7 6 2.9325 -2.4780 -0.0971 8 7 4.0752 -2.9626 -0.5351 9 14 1.3576 -2.7926 -1.0512 10 1 1.1380 -1.6900 -2.0215 11 1 1.4705 -4.0802 -1.7823 12 1 0.2122 -2.8575 -0.1082 13 6 1.5660 -0.2659 2.5232 14 6 2.5140 0.8049 3.0668 15 6 2.0411 1.2489 4.4524 16 6 2.9896 2.3193 4.9962 17 6 3.7841 1.9833 6.2599 18 6 2.6225 2.9780 6.3274 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 4.0994 -3.4834 -1.3531 27 1 1.5611 -1.1227 3.1970 28 1 0.5587 0.1442 2.4497 29 1 3.5213 0.3949 3.1402 30 1 2.5188 1.6618 2.3930 31 1 1.0340 1.6591 4.3785 32 1 2.0361 0.3922 5.1264 33 1 3.4778 2.9403 4.2451 34 1 3.6313 0.9995 6.7036 35 1 4.7947 2.3835 6.3403 36 1 2.8697 4.0323 6.4523 37 1 1.7056 2.6485 6.8160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000406042130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:20 Heat of formation + Delta-G solvation = 18.007112 kcal Electronic energy + Delta-G solvation = -14566.797452 eV Core-core repulsion = 12344.691284 eV Total energy + Delta-G solvation = -2222.106168 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.18014 -38.21608 -34.33723 -33.99566 -31.61208 -28.04859 -27.81238 -24.87151 -23.21367 -22.61129 -21.39727 -21.00437 -18.74492 -17.34060 -16.65096 -15.94575 -15.58389 -15.14644 -15.10220 -14.88531 -14.42200 -13.76293 -13.36818 -13.22789 -13.12390 -12.87897 -12.64335 -12.45593 -12.31545 -12.27530 -12.05560 -11.77834 -11.54266 -11.30241 -11.13184 -10.96045 -10.67475 -10.47035 -8.87745 -8.20000 -5.34048 1.32377 1.42601 1.51638 2.45357 2.93298 2.99238 3.42735 3.84358 4.08121 4.10891 4.17269 4.33894 4.39311 4.46853 4.57689 4.64819 4.78203 4.81531 4.84418 4.89398 4.95868 5.00155 5.07717 5.12587 5.14770 5.20240 5.29903 5.32401 5.42968 5.49194 5.59583 5.70771 5.93245 6.15781 7.01995 7.75441 8.12685 8.99455 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040685 B = 0.007871 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.057397 B = 3556.691869 C = 3875.205421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 C -0.149 4.149 4 N -0.609 5.609 5 C -0.254 4.254 6 H 0.044 0.956 7 C -0.023 4.023 8 N -0.938 5.938 9 Si 0.919 3.081 10 H -0.267 1.267 11 H -0.315 1.315 12 H -0.263 1.263 13 C 0.144 3.856 14 C -0.126 4.126 15 C -0.078 4.078 16 C -0.163 4.163 17 C -0.191 4.191 18 C -0.169 4.169 19 H 0.075 0.925 20 H 0.072 0.928 21 H 0.036 0.964 22 H 0.046 0.954 23 H 0.033 0.967 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.260 0.740 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 12.178 8.548 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.031 3.969 3 C -0.208 4.208 4 N -0.332 5.332 5 C -0.383 4.383 6 H 0.062 0.938 7 C -0.220 4.220 8 N -0.582 5.582 9 Si 0.748 3.252 10 H -0.194 1.194 11 H -0.244 1.244 12 H -0.188 1.188 13 C 0.019 3.981 14 C -0.165 4.165 15 C -0.116 4.116 16 C -0.182 4.182 17 C -0.227 4.227 18 C -0.205 4.205 19 H 0.094 0.906 20 H 0.091 0.909 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.144 12.081 8.455 16.385 hybrid contribution -0.026 -0.869 -0.699 1.115 sum -7.170 11.212 7.756 15.403 Atomic orbital electron populations 1.22385 0.96144 1.01239 1.02960 1.20863 0.93423 0.93279 0.89362 1.22239 1.00158 0.96369 1.02002 1.44368 1.52481 1.34434 1.01868 1.18720 1.10550 1.07780 1.01268 0.93774 1.25712 0.98640 0.99108 0.98510 1.70176 1.25763 1.39433 1.22863 0.86417 0.83716 0.76159 0.78944 1.19382 1.24425 1.18804 1.20994 0.96260 0.95761 0.85090 1.22119 0.99019 0.99113 0.96262 1.21069 0.98430 0.96688 0.95439 1.22358 1.02730 1.01676 0.91392 1.23097 0.96974 1.00775 1.01903 1.23039 0.99405 0.98518 0.99580 0.90579 0.90861 0.94455 0.93553 0.94811 0.91580 0.91177 0.93103 0.94459 0.91698 0.95248 0.91723 0.90571 0.92485 0.88504 0.89119 0.88669 0.87850 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.91 8.43 71.98 0.61 -5.30 16 2 C 0.14 5.77 2.20 44.99 0.10 5.86 16 3 C -0.15 -5.24 8.48 71.98 0.61 -4.63 16 4 N -0.61 -28.66 2.19 -678.03 -1.48 -30.14 16 5 C -0.25 -14.63 9.90 84.03 0.83 -13.79 16 6 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 7 C -0.02 -1.39 4.95 84.86 0.42 -0.97 16 8 N -0.94 -59.65 13.97 21.65 0.30 -59.34 16 9 Si 0.92 46.43 23.78 68.60 1.63 48.06 16 10 H -0.27 -12.67 6.39 99.48 0.64 -12.04 16 11 H -0.32 -16.31 7.11 99.48 0.71 -15.60 16 12 H -0.26 -12.78 6.21 99.48 0.62 -12.17 16 13 C 0.14 5.50 5.23 86.38 0.45 5.95 16 14 C -0.13 -4.24 5.24 30.59 0.16 -4.08 16 15 C -0.08 -2.05 5.50 30.59 0.17 -1.88 16 16 C -0.16 -3.89 5.73 -10.79 -0.06 -3.95 16 17 C -0.19 -4.16 10.18 30.62 0.31 -3.85 16 18 C -0.17 -3.19 10.25 30.62 0.31 -2.87 16 19 H 0.08 2.28 6.51 -2.39 -0.02 2.27 16 20 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 21 H 0.04 1.43 5.40 -2.39 -0.01 1.42 16 22 H 0.05 2.26 4.02 -2.39 -0.01 2.25 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 2.17 5.99 -2.39 -0.01 2.15 16 26 H 0.26 15.73 8.31 -92.71 -0.77 14.95 16 27 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 28 H 0.06 2.14 6.15 -2.38 -0.01 2.12 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.06 2.12 5.42 -2.39 -0.01 2.11 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.51 7.87 -2.38 -0.02 1.49 16 33 H 0.10 2.38 8.08 -2.39 -0.02 2.36 16 34 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.05 282.75 5.22 -59.83 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.85 Total: 11.10 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.91 Total: -29.51 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -1.18 Total: -89.48 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.63 Total: 48.06 kcal Total: -65.05 5.22 -59.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406042130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.837 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds