Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 108.85015 * 2 1 4 4 C 1.50473 * 108.87470 * 118.45606 * 2 1 3 5 5 C 1.54238 * 108.52751 * 214.92627 * 4 2 1 6 6 C 1.45544 * 112.40831 * 280.02279 * 5 4 2 7 7 C 1.54232 * 112.40684 * 61.93415 * 6 5 4 8 8 H 1.08999 * 109.63570 * 39.72016 * 7 6 5 9 9 N 1.46501 * 109.62962 * 160.30196 * 7 6 5 10 10 C 1.46502 * 119.99853 * 59.02245 * 9 7 6 11 11 C 1.36938 * 120.00298 * 239.02453 * 9 7 6 12 12 H 1.07996 * 119.99494 * 325.22220 * 11 9 7 13 13 C 1.38810 * 119.99900 * 145.21933 * 11 9 7 14 14 N 1.31625 * 119.99548 * 157.45499 * 13 11 9 15 15 Si 1.86791 * 120.00294 * 337.45222 * 13 11 9 16 16 H 1.48503 * 109.46934 * 95.44123 * 15 13 11 17 17 H 1.48501 * 109.47317 * 215.43668 * 15 13 11 18 18 H 1.48506 * 109.47349 * 335.44352 * 15 13 11 19 19 C 1.50474 * 108.51719 * 280.00752 * 7 6 5 20 20 C 1.54058 * 108.88127 * 241.43484 * 2 1 3 21 21 H 1.08998 * 109.46967 * 178.55938 * 1 2 3 22 22 H 1.08999 * 109.46563 * 58.56602 * 1 2 3 23 23 H 1.08994 * 109.46968 * 298.56675 * 1 2 3 24 24 H 1.08994 * 109.63091 * 334.64196 * 4 2 1 25 25 H 1.09001 * 109.62451 * 95.21727 * 4 2 1 26 26 H 1.09001 * 108.90133 * 159.26454 * 5 4 2 27 27 H 1.09001 * 108.81705 * 40.72085 * 5 4 2 28 28 H 1.09000 * 108.89130 * 301.18125 * 6 5 4 29 29 H 1.08998 * 108.89606 * 182.69205 * 6 5 4 30 30 H 1.09006 * 109.46973 * 89.90098 * 10 9 7 31 31 H 1.08999 * 109.47338 * 209.89995 * 10 9 7 32 32 H 1.09000 * 109.47154 * 329.90379 * 10 9 7 33 33 H 0.96997 * 119.99796 * 179.97438 * 14 13 11 34 34 H 1.08995 * 108.87824 * 333.37750 * 19 7 6 35 35 H 1.09001 * 108.87876 * 214.92960 * 19 7 6 36 36 H 1.08996 * 108.81734 * 318.36815 * 20 2 1 37 37 H 1.09010 * 108.81280 * 76.75523 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0316 0.0000 4 6 2.0168 -0.6784 1.2518 5 6 3.3099 0.0215 1.7174 6 6 4.4788 -0.4179 0.9698 7 6 4.3715 -0.0921 -0.5339 8 1 3.9233 0.8929 -0.6642 9 7 5.7057 -0.1136 -1.1386 10 6 6.5159 -1.3329 -1.0821 11 6 6.1956 1.0059 -1.7566 12 1 5.5275 1.6607 -2.2962 13 6 7.5507 1.2990 -1.6894 14 7 8.1027 2.0723 -2.6002 15 14 8.5909 0.5959 -0.3063 16 1 9.2544 -0.6492 -0.7698 17 1 9.6221 1.5879 0.0910 18 1 7.7232 0.2899 0.8594 19 6 3.5034 -1.1329 -1.1876 20 6 2.0286 -0.6970 -1.2802 21 1 -0.3633 -1.0273 -0.0258 22 1 -0.3632 0.5360 -0.8769 23 1 -0.3633 0.4914 0.9025 24 1 1.2575 -0.6000 2.0298 25 1 2.2236 -1.7280 1.0426 26 1 3.4662 -0.1925 2.7747 27 1 3.1930 1.0976 1.5892 28 1 4.5903 -1.4954 1.0904 29 1 5.3628 0.0742 1.3754 30 1 6.3072 -1.9487 -1.9570 31 1 7.5728 -1.0666 -1.0690 32 1 6.2705 -1.8907 -0.1784 33 1 9.0496 2.2774 -2.5531 34 1 3.5629 -2.0552 -0.6099 35 1 3.8784 -1.3241 -2.1931 36 1 1.4127 -1.5774 -1.4638 37 1 1.9186 -0.0105 -2.1198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = 3.267899 kcal Electronic energy + Delta-G solvation = -15101.167698 eV Core-core repulsion = 12878.422390 eV Total energy + Delta-G solvation = -2222.745308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97174 -35.54782 -32.81979 -31.88680 -30.46281 -26.94300 -26.06319 -24.63471 -22.72814 -21.57124 -19.84504 -18.21129 -16.72990 -15.50442 -15.10492 -14.62869 -14.40572 -13.68277 -13.21134 -12.82310 -12.75330 -12.53779 -12.28857 -12.20459 -12.04300 -11.39534 -11.30923 -11.05020 -10.52683 -10.43061 -10.32979 -10.11548 -9.99865 -9.91284 -9.75466 -9.58987 -9.38438 -8.43680 -6.76577 -5.93349 -3.30644 3.35161 3.50313 3.56047 4.57936 4.89355 4.99245 5.05505 5.19351 5.37740 5.44913 5.48654 5.65957 5.74903 5.81832 5.87461 5.98897 6.00828 6.04735 6.18905 6.29195 6.35674 6.43930 6.47353 6.53985 6.59311 6.64077 6.65741 6.75241 6.79123 6.81913 7.09606 7.13753 8.11442 8.43570 9.06733 9.79118 10.20620 11.22917 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045544 B = 0.009241 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.647568 B = 3029.295499 C = 3215.620207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.139 4.139 7 C 0.182 3.818 8 H 0.071 0.929 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.263 4.263 12 H 0.079 0.921 13 C 0.029 3.971 14 N -0.904 5.904 15 Si 0.885 3.115 16 H -0.289 1.289 17 H -0.305 1.305 18 H -0.270 1.270 19 C -0.129 4.129 20 C -0.105 4.105 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.013 0.987 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 -6.254 6.919 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.179 4.179 7 C 0.075 3.925 8 H 0.090 0.910 9 N -0.331 5.331 10 C -0.032 4.032 11 C -0.391 4.391 12 H 0.097 0.903 13 C -0.171 4.171 14 N -0.547 5.547 15 Si 0.717 3.283 16 H -0.217 1.217 17 H -0.233 1.233 18 H -0.195 1.195 19 C -0.168 4.168 20 C -0.143 4.143 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.750 -6.160 6.841 14.927 hybrid contribution 0.811 -0.399 0.753 1.177 sum -10.939 -6.559 7.594 14.845 Atomic orbital electron populations 1.21950 0.96050 1.01201 1.01161 1.20974 0.94666 1.00525 0.95045 0.91158 1.21417 0.96843 1.00010 0.96510 1.20433 0.95080 1.00426 0.98857 1.21087 0.97884 1.00404 0.98495 1.20165 0.85826 0.97440 0.89083 0.91037 1.44203 1.14795 1.09085 1.65033 1.21261 0.95382 0.89095 0.97486 1.18836 0.92819 1.01881 1.25585 0.90322 1.25426 0.97200 0.96985 0.97449 1.69879 1.11756 1.40188 1.32830 0.86841 0.79679 0.76769 0.85042 1.21741 1.23336 1.19539 1.21926 0.94003 0.99260 1.01659 1.21899 0.96174 0.99487 0.96745 0.93125 0.93073 0.93083 0.92562 0.91949 0.93315 0.92288 0.93454 0.92103 0.96843 0.94204 0.95143 0.92846 0.93449 0.91652 0.93079 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.84 37.16 0.33 -1.26 16 2 C -0.09 -1.22 2.21 -91.33 -0.20 -1.43 16 3 H 0.07 1.00 6.62 -51.93 -0.34 0.66 16 4 C -0.11 -1.41 5.13 -27.35 -0.14 -1.55 16 5 C -0.11 -1.61 5.26 -29.60 -0.16 -1.77 16 6 C -0.14 -2.49 4.09 -29.60 -0.12 -2.61 16 7 C 0.18 3.64 2.28 -68.55 -0.16 3.48 16 8 H 0.07 1.50 6.74 -51.93 -0.35 1.15 16 9 N -0.61 -14.79 2.30 -174.19 -0.40 -15.19 16 10 C 0.11 2.55 8.89 59.85 0.53 3.09 16 11 C -0.26 -7.51 9.87 -15.06 -0.15 -7.65 16 12 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 13 C 0.03 0.86 5.32 -17.43 -0.09 0.76 16 14 N -0.90 -28.18 13.97 55.49 0.78 -27.41 16 15 Si 0.89 22.96 24.92 -169.99 -4.24 18.72 16 16 H -0.29 -7.32 6.67 56.52 0.38 -6.94 16 17 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.13 -2.22 4.51 -27.43 -0.12 -2.34 16 20 C -0.10 -1.50 5.23 -25.62 -0.13 -1.64 16 21 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.51 8.01 -51.93 -0.42 0.09 16 24 H 0.06 0.63 7.63 -51.93 -0.40 0.24 16 25 H 0.06 0.81 6.98 -51.93 -0.36 0.45 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.88 7.46 -51.93 -0.39 0.50 16 28 H 0.05 0.81 6.86 -51.93 -0.36 0.45 16 29 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.98 2.91 -51.93 -0.15 0.83 16 32 H 0.03 0.61 6.85 -51.93 -0.36 0.25 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.05 0.76 6.63 -51.93 -0.34 0.42 16 35 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 36 H 0.05 0.66 7.96 -51.93 -0.41 0.24 16 37 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 271.45 15.07 4.09 4.09 Total: -1.00 -30.08 271.45 -6.59 -36.67 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -6.40 Total: -3.96 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.41 Total: -12.92 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.37 Total: -42.60 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.24 Total: 18.72 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.08 -6.59 -36.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.937 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds