Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 108.85015 * 2 1 4 4 C 1.50473 * 108.87470 * 118.45606 * 2 1 3 5 5 C 1.54238 * 108.52751 * 214.92627 * 4 2 1 6 6 C 1.45544 * 112.40831 * 280.02279 * 5 4 2 7 7 C 1.54232 * 112.40684 * 61.93415 * 6 5 4 8 8 H 1.08999 * 109.63570 * 39.72016 * 7 6 5 9 9 N 1.46501 * 109.62962 * 160.30196 * 7 6 5 10 10 C 1.46502 * 119.99853 * 59.02245 * 9 7 6 11 11 C 1.36938 * 120.00298 * 239.02453 * 9 7 6 12 12 H 1.07996 * 119.99494 * 325.22220 * 11 9 7 13 13 C 1.38810 * 119.99900 * 145.21933 * 11 9 7 14 14 N 1.31625 * 119.99548 * 157.45499 * 13 11 9 15 15 Si 1.86791 * 120.00294 * 337.45222 * 13 11 9 16 16 H 1.48503 * 109.46934 * 95.44123 * 15 13 11 17 17 H 1.48501 * 109.47317 * 215.43668 * 15 13 11 18 18 H 1.48506 * 109.47349 * 335.44352 * 15 13 11 19 19 C 1.50474 * 108.51719 * 280.00752 * 7 6 5 20 20 C 1.54058 * 108.88127 * 241.43484 * 2 1 3 21 21 H 1.08998 * 109.46967 * 178.55938 * 1 2 3 22 22 H 1.08999 * 109.46563 * 58.56602 * 1 2 3 23 23 H 1.08994 * 109.46968 * 298.56675 * 1 2 3 24 24 H 1.08994 * 109.63091 * 334.64196 * 4 2 1 25 25 H 1.09001 * 109.62451 * 95.21727 * 4 2 1 26 26 H 1.09001 * 108.90133 * 159.26454 * 5 4 2 27 27 H 1.09001 * 108.81705 * 40.72085 * 5 4 2 28 28 H 1.09000 * 108.89130 * 301.18125 * 6 5 4 29 29 H 1.08998 * 108.89606 * 182.69205 * 6 5 4 30 30 H 1.09006 * 109.46973 * 89.90098 * 10 9 7 31 31 H 1.08999 * 109.47338 * 209.89995 * 10 9 7 32 32 H 1.09000 * 109.47154 * 329.90379 * 10 9 7 33 33 H 0.96997 * 119.99796 * 179.97438 * 14 13 11 34 34 H 1.08995 * 108.87824 * 333.37750 * 19 7 6 35 35 H 1.09001 * 108.87876 * 214.92960 * 19 7 6 36 36 H 1.08996 * 108.81734 * 318.36815 * 20 2 1 37 37 H 1.09010 * 108.81280 * 76.75523 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0316 0.0000 4 6 2.0168 -0.6784 1.2518 5 6 3.3099 0.0215 1.7174 6 6 4.4788 -0.4179 0.9698 7 6 4.3715 -0.0921 -0.5339 8 1 3.9233 0.8929 -0.6642 9 7 5.7057 -0.1136 -1.1386 10 6 6.5159 -1.3329 -1.0821 11 6 6.1956 1.0059 -1.7566 12 1 5.5275 1.6607 -2.2962 13 6 7.5507 1.2990 -1.6894 14 7 8.1027 2.0723 -2.6002 15 14 8.5909 0.5959 -0.3063 16 1 9.2544 -0.6492 -0.7698 17 1 9.6221 1.5879 0.0910 18 1 7.7232 0.2899 0.8594 19 6 3.5034 -1.1329 -1.1876 20 6 2.0286 -0.6970 -1.2802 21 1 -0.3633 -1.0273 -0.0258 22 1 -0.3632 0.5360 -0.8769 23 1 -0.3633 0.4914 0.9025 24 1 1.2575 -0.6000 2.0298 25 1 2.2236 -1.7280 1.0426 26 1 3.4662 -0.1925 2.7747 27 1 3.1930 1.0976 1.5892 28 1 4.5903 -1.4954 1.0904 29 1 5.3628 0.0742 1.3754 30 1 6.3072 -1.9487 -1.9570 31 1 7.5728 -1.0666 -1.0690 32 1 6.2705 -1.8907 -0.1784 33 1 9.0496 2.2774 -2.5531 34 1 3.5629 -2.0552 -0.6099 35 1 3.8784 -1.3241 -2.1931 36 1 1.4127 -1.5774 -1.4638 37 1 1.9186 -0.0105 -2.1198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = -14.288947 kcal Electronic energy + Delta-G solvation = -15101.929020 eV Core-core repulsion = 12878.422390 eV Total energy + Delta-G solvation = -2223.506630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32056 -37.21041 -34.36376 -33.54921 -32.11472 -28.18478 -27.95713 -26.12908 -24.13037 -23.12178 -21.13917 -19.58498 -18.87834 -17.45898 -16.52926 -15.88882 -15.78125 -15.25390 -14.74450 -14.45566 -14.33192 -14.12231 -13.79922 -13.67962 -13.28913 -12.99858 -12.64641 -12.45593 -12.24400 -12.06548 -11.79658 -11.69210 -11.43356 -11.39014 -11.14827 -10.99359 -10.90413 -10.60049 -8.77775 -8.21010 -5.54970 1.27683 1.38856 1.50988 2.40733 3.04922 3.36321 3.75188 3.88236 4.09060 4.27776 4.29876 4.44385 4.52785 4.54264 4.62491 4.70459 4.77557 4.85895 4.94276 4.94549 4.96733 5.06294 5.19063 5.23036 5.28375 5.35160 5.36092 5.53910 5.54996 5.59500 5.62279 5.71352 5.93827 6.15563 6.99094 7.65694 8.06848 8.99532 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045544 B = 0.009241 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.647568 B = 3029.295499 C = 3215.620207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.050 0.950 4 C -0.103 4.103 5 C -0.111 4.111 6 C -0.127 4.127 7 C 0.177 3.823 8 H 0.049 0.951 9 N -0.621 5.621 10 C 0.110 3.890 11 C -0.256 4.256 12 H 0.040 0.960 13 C -0.029 4.029 14 N -0.953 5.953 15 Si 0.953 3.047 16 H -0.276 1.276 17 H -0.310 1.310 18 H -0.259 1.259 19 C -0.121 4.121 20 C -0.101 4.101 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.021 0.979 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.348 -8.344 9.003 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.069 0.931 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.166 4.166 7 C 0.071 3.929 8 H 0.068 0.932 9 N -0.345 5.345 10 C -0.034 4.034 11 C -0.385 4.385 12 H 0.057 0.943 13 C -0.224 4.224 14 N -0.598 5.598 15 Si 0.782 3.218 16 H -0.203 1.203 17 H -0.239 1.239 18 H -0.183 1.183 19 C -0.160 4.160 20 C -0.139 4.139 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.225 -8.281 8.946 17.986 hybrid contribution 1.175 0.270 0.028 1.206 sum -12.050 -8.010 8.974 17.026 Atomic orbital electron populations 1.21899 0.93932 1.02225 1.01800 1.20960 0.96456 0.99244 0.94605 0.93107 1.21386 0.96190 0.99749 0.96726 1.20418 0.94854 1.00077 0.99540 1.20946 0.98284 1.01009 0.96396 1.20325 0.83992 0.97563 0.91025 0.93232 1.44341 1.16350 1.08406 1.65453 1.21323 0.94079 0.88585 0.99391 1.18730 0.92431 1.02546 1.24838 0.94265 1.26061 0.98629 0.98250 0.99480 1.70007 1.12184 1.42837 1.34730 0.85743 0.77874 0.76244 0.81901 1.20346 1.23915 1.18322 1.21778 0.95167 0.98959 1.00097 1.21875 0.94504 1.00281 0.97280 0.91804 0.93166 0.91902 0.90163 0.91357 0.91341 0.93271 0.91940 0.94884 0.96056 0.95893 0.91991 0.92875 0.91588 0.94018 0.90779 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.84 71.98 0.64 -1.97 16 2 C -0.09 -2.24 2.21 -11.25 -0.02 -2.26 16 3 H 0.05 1.41 6.62 -2.38 -0.02 1.39 16 4 C -0.10 -2.25 5.13 30.20 0.15 -2.10 16 5 C -0.11 -2.96 5.26 28.74 0.15 -2.81 16 6 C -0.13 -4.28 4.09 28.73 0.12 -4.16 16 7 C 0.18 6.98 2.28 44.59 0.10 7.08 16 8 H 0.05 2.14 6.74 -2.39 -0.02 2.13 16 9 N -0.62 -30.24 2.30 -705.02 -1.62 -31.86 16 10 C 0.11 4.83 8.89 127.77 1.14 5.96 16 11 C -0.26 -15.08 9.87 84.03 0.83 -14.25 16 12 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 13 C -0.03 -1.72 5.32 84.86 0.45 -1.27 16 14 N -0.95 -61.31 13.97 21.65 0.30 -61.01 16 15 Si 0.95 47.94 24.92 68.60 1.71 49.65 16 16 H -0.28 -13.21 6.67 99.48 0.66 -12.54 16 17 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 18 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.12 -3.97 4.51 30.14 0.14 -3.83 16 20 C -0.10 -2.72 5.23 31.31 0.16 -2.56 16 21 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 1.03 8.01 -2.39 -0.02 1.01 16 24 H 0.08 1.42 7.63 -2.39 -0.02 1.40 16 25 H 0.07 1.45 6.98 -2.39 -0.02 1.44 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.41 7.46 -2.39 -0.02 1.39 16 28 H 0.06 1.91 6.86 -2.39 -0.02 1.89 16 29 H 0.03 1.28 8.12 -2.39 -0.02 1.27 16 30 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.02 1.08 2.91 -2.39 -0.01 1.08 16 32 H 0.06 2.30 6.85 -2.39 -0.02 2.28 16 33 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 34 H 0.07 1.92 6.63 -2.39 -0.02 1.90 16 35 H 0.04 1.55 7.93 -2.39 -0.02 1.54 16 36 H 0.07 1.67 7.96 -2.39 -0.02 1.65 16 37 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -66.19 271.45 5.21 -60.97 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 0.97 Total: 4.41 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 3.85 Total: -22.17 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -1.32 Total: -92.87 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.71 Total: 49.65 kcal Total: -66.19 5.21 -60.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.686 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds