Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47127 * 2 1 4 4 C 1.53000 * 109.46781 * 240.00571 * 2 1 3 5 5 C 1.53002 * 109.47085 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47269 * 59.99579 * 5 4 2 7 7 C 1.52997 * 109.46755 * 60.00302 * 6 5 4 8 8 C 1.52998 * 109.47263 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47252 * 300.00581 * 6 5 4 10 10 C 1.52997 * 109.47053 * 120.00844 * 2 1 3 11 11 H 1.08990 * 109.47430 * 59.99791 * 10 2 1 12 12 N 1.46499 * 109.46833 * 299.99439 * 10 2 1 13 13 C 1.36935 * 119.99926 * 155.00421 * 12 10 2 14 14 H 1.08005 * 119.99877 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00369 * 179.73019 * 13 12 10 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99247 * 17 15 13 19 19 H 1.48496 * 109.47375 * 209.99772 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99467 * 17 15 13 21 21 H 1.08998 * 109.47317 * 299.99348 * 1 2 3 22 22 H 1.09006 * 109.47233 * 59.99317 * 1 2 3 23 23 H 1.09002 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47552 * 299.99744 * 4 2 1 25 25 H 1.09005 * 109.47655 * 59.99939 * 4 2 1 26 26 H 1.08998 * 109.47621 * 180.02562 * 5 4 2 27 27 H 1.09007 * 109.46938 * 299.99813 * 5 4 2 28 28 H 1.09007 * 109.47106 * 60.00410 * 7 6 5 29 29 H 1.09006 * 109.47051 * 179.97438 * 7 6 5 30 30 H 1.08993 * 109.47299 * 299.99912 * 7 6 5 31 31 H 1.09001 * 109.47552 * 59.99791 * 8 6 5 32 32 H 1.08997 * 109.47450 * 180.02562 * 8 6 5 33 33 H 1.09007 * 109.46811 * 299.99992 * 8 6 5 34 34 H 1.09007 * 109.46865 * 299.99712 * 9 6 5 35 35 H 1.08997 * 109.46884 * 180.02562 * 9 6 5 36 36 H 0.97005 * 120.00261 * 335.00546 * 12 10 2 37 37 H 0.97004 * 120.00382 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7217 -1.2491 6 6 4.0795 -1.4434 0.0001 7 6 3.5689 -2.8857 -0.0003 8 6 5.6094 -1.4434 0.0007 9 6 3.5695 -0.7223 1.2494 10 6 2.0400 -0.7214 1.2491 11 1 1.6766 -1.7490 1.2490 12 7 1.5517 -0.0309 2.4453 13 6 1.4210 -0.7141 3.6249 14 1 1.6774 -1.7621 3.6732 15 6 0.9636 -0.0585 4.7597 16 7 0.6562 1.2200 4.7022 17 14 0.7860 -0.9902 6.3690 18 1 2.0560 -0.9042 7.1336 19 1 -0.3143 -0.3932 7.1678 20 1 0.4749 -2.4142 6.0846 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5140 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6766 -1.7488 -1.2495 25 1 1.6766 -0.2073 -2.1393 26 1 3.9333 -1.2351 -2.1393 27 1 3.9336 0.3059 -1.2488 28 1 3.9323 -3.3995 -0.8904 29 1 3.9323 -3.4000 0.8894 30 1 2.4790 -2.8853 -0.0005 31 1 5.9729 -0.4158 0.0011 32 1 5.9725 -1.9579 0.8904 33 1 5.9731 -1.9570 -0.8894 34 1 3.9332 0.3053 1.2497 35 1 3.9329 -1.2362 2.1393 36 1 1.3210 0.9103 2.4019 37 1 0.3369 1.6783 5.4953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642839269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = -40.540068 kcal Electronic energy + Delta-G solvation = -15040.207010 eV Core-core repulsion = 12815.562046 eV Total energy + Delta-G solvation = -2224.644964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63601 -36.43705 -34.79620 -32.84237 -29.97858 -29.22182 -28.12798 -25.85682 -24.79500 -22.74216 -21.22109 -19.45776 -18.86864 -16.87089 -15.96528 -15.67399 -15.34215 -15.20987 -14.95804 -14.39428 -14.15520 -13.84963 -13.14514 -12.94142 -12.88380 -12.83062 -12.69735 -12.60842 -12.22533 -12.19795 -12.12914 -11.89993 -11.56318 -11.47739 -11.26091 -10.99596 -10.70827 -10.67940 -8.92455 -7.91701 -5.18148 1.45089 1.46590 1.54827 2.56871 3.40789 3.77190 3.82025 3.96880 4.18680 4.26250 4.31309 4.50742 4.60945 4.69229 4.72427 4.78283 4.85429 4.91972 5.00116 5.03246 5.05375 5.16819 5.18479 5.23833 5.26781 5.38824 5.41440 5.46861 5.47707 5.60385 5.63593 5.70434 5.79367 6.31475 7.36468 8.16231 8.38810 9.32066 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034791 B = 0.009341 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.620855 B = 2996.773619 C = 3435.413002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.053 0.947 4 C -0.105 4.105 5 C -0.101 4.101 6 C -0.063 4.063 7 C -0.140 4.140 8 C -0.136 4.136 9 C -0.113 4.113 10 C 0.178 3.822 11 H 0.040 0.960 12 N -0.735 5.735 13 C -0.230 4.230 14 H 0.070 0.930 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.967 3.033 18 H -0.290 1.290 19 H -0.296 1.296 20 H -0.271 1.271 21 H 0.030 0.970 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.030 0.970 36 H 0.370 0.630 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -5.907 -13.787 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 H 0.071 0.929 4 C -0.143 4.143 5 C -0.139 4.139 6 C -0.064 4.064 7 C -0.197 4.197 8 C -0.193 4.193 9 C -0.153 4.153 10 C 0.070 3.930 11 H 0.058 0.942 12 N -0.374 5.374 13 C -0.362 4.362 14 H 0.088 0.912 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.797 3.203 18 H -0.217 1.217 19 H -0.222 1.222 20 H -0.196 1.196 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.202 0.798 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.877 -6.071 -13.667 16.068 hybrid contribution -0.291 0.281 1.568 1.619 sum 5.586 -5.790 -12.099 14.530 Atomic orbital electron populations 1.21663 0.95497 1.01192 1.00723 1.21310 0.95567 0.99070 0.95136 0.92857 1.21572 0.95776 1.00733 0.96193 1.21560 0.95130 1.00202 0.96978 1.20552 0.95634 0.95598 0.94583 1.21921 1.01110 0.95094 1.01557 1.21825 0.94105 1.01534 1.01851 1.22115 0.97838 0.98718 0.96659 1.20496 0.91881 0.94823 0.85757 0.94222 1.42649 1.78129 1.10223 1.06405 1.19564 1.34311 0.93852 0.88441 0.91225 1.25481 1.03504 0.96864 1.01203 1.69817 1.53276 1.10014 1.29107 0.85223 0.76817 0.78090 0.80203 1.21707 1.22234 1.19552 0.95053 0.91507 0.93306 0.91341 0.90476 0.89921 0.92505 0.90929 0.94009 0.92827 0.93124 0.93634 0.90919 0.94378 0.95063 0.79845 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.04 71.98 0.65 -3.87 16 2 C -0.09 -3.06 2.30 -10.79 -0.02 -3.08 16 3 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.11 -2.62 4.93 30.59 0.15 -2.47 16 5 C -0.10 -2.36 4.73 30.59 0.14 -2.21 16 6 C -0.06 -1.70 0.77 -52.18 -0.04 -1.74 16 7 C -0.14 -3.56 7.78 71.98 0.56 -3.00 16 8 C -0.14 -3.20 8.47 71.98 0.61 -2.59 16 9 C -0.11 -4.18 4.31 30.58 0.13 -4.05 16 10 C 0.18 7.22 1.94 44.97 0.09 7.30 16 11 H 0.04 1.67 6.37 -2.39 -0.02 1.66 16 12 N -0.74 -38.12 4.43 -323.04 -1.43 -39.55 16 13 C -0.23 -13.09 9.93 84.03 0.83 -12.26 16 14 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 15 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 16 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 17 Si 0.97 47.44 29.55 68.60 2.03 49.46 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H 0.03 1.27 7.45 -2.39 -0.02 1.25 16 22 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.66 6.43 -2.39 -0.02 1.64 16 25 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.05 1.46 4.81 -2.39 -0.01 1.45 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.37 20.74 7.58 -92.70 -0.70 20.04 16 37 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -63.69 282.66 4.76 -58.93 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.31 Total: 23.85 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.57 Total: -32.14 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -1.15 Total: -100.11 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -63.69 4.76 -58.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642839269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.392 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds