Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.52994 * 109.47449 * 120.00159 * 2 1 3 5 5 C 1.53008 * 109.47145 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47047 * 300.00359 * 5 4 2 7 7 C 1.53008 * 109.47047 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47334 * 299.99567 * 6 5 4 9 9 C 1.52994 * 109.47441 * 59.99823 * 6 5 4 10 10 C 1.52999 * 109.47449 * 299.99807 * 9 6 5 11 11 H 1.09003 * 109.46903 * 300.00159 * 10 9 6 12 12 N 1.46493 * 109.47638 * 179.97438 * 10 9 6 13 13 C 1.36945 * 119.99892 * 84.99908 * 12 10 9 14 14 H 1.08000 * 119.99422 * 359.72792 * 13 12 10 15 15 C 1.38811 * 120.00031 * 179.72716 * 13 12 10 16 16 N 1.31616 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47389 * 59.99917 * 17 15 13 19 19 H 1.48501 * 109.47057 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47102 * 299.99569 * 17 15 13 21 21 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46886 * 299.99387 * 1 2 3 23 23 H 1.09003 * 109.47419 * 59.99597 * 1 2 3 24 24 H 1.08999 * 109.47525 * 299.99604 * 4 2 1 25 25 H 1.09003 * 109.47197 * 60.00021 * 4 2 1 26 26 H 1.09003 * 109.46803 * 60.00089 * 5 4 2 27 27 H 1.08994 * 109.47095 * 179.97438 * 5 4 2 28 28 H 1.08994 * 109.47095 * 59.99614 * 7 6 5 29 29 H 1.08999 * 109.46839 * 179.97438 * 7 6 5 30 30 H 1.09003 * 109.46803 * 299.99731 * 7 6 5 31 31 H 1.09000 * 109.47052 * 59.99953 * 8 6 5 32 32 H 1.09001 * 109.47809 * 180.02562 * 8 6 5 33 33 H 1.09003 * 109.47279 * 300.00391 * 8 6 5 34 34 H 1.09003 * 109.47448 * 179.97438 * 9 6 5 35 35 H 1.09003 * 109.47197 * 59.99786 * 9 6 5 36 36 H 0.97000 * 120.00738 * 264.73373 * 12 10 9 37 37 H 0.97004 * 119.99151 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5701 -0.7218 1.2488 6 6 4.0795 -1.4432 -0.0005 7 6 5.6096 -1.4432 -0.0012 8 6 3.5691 -2.8856 -0.0003 9 6 3.5695 -0.7220 -1.2497 10 6 2.0395 -0.7215 -1.2494 11 1 1.6758 -1.7491 -1.2492 12 7 1.5510 -0.0304 -2.4451 13 6 1.4198 -0.7131 -3.6250 14 1 1.6805 -1.7600 -3.6749 15 6 0.9516 -0.0597 -4.7566 16 7 0.6343 1.2162 -4.6958 17 14 0.7719 -0.9912 -6.3658 18 1 -0.1789 -2.1171 -6.1825 19 1 0.2573 -0.0738 -7.4140 20 1 2.0950 -1.5230 -6.7803 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.6768 -0.2075 2.1392 25 1 1.6768 -1.7489 1.2491 26 1 3.9338 0.3058 1.2486 27 1 3.9335 -1.2352 2.1389 28 1 5.9733 -1.9567 0.8887 29 1 5.9725 -1.9576 -0.8911 30 1 5.9729 -0.4155 -0.0017 31 1 2.4791 -2.8853 0.0000 32 1 3.9324 -3.3998 -0.8901 33 1 3.9325 -3.3995 0.8897 34 1 3.9328 -1.2357 -2.1397 35 1 3.9331 0.3056 -1.2499 36 1 1.3169 0.9099 -2.4004 37 1 0.3075 1.6729 -5.4867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642839270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = -23.918108 kcal Electronic energy + Delta-G solvation = -15039.220731 eV Core-core repulsion = 12815.296549 eV Total energy + Delta-G solvation = -2223.924182 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.28944 -34.78857 -33.15861 -30.99006 -28.56546 -27.63840 -27.01288 -23.93669 -23.44412 -21.23272 -19.73664 -18.06014 -16.91867 -15.17045 -14.39387 -14.20767 -13.90387 -13.70352 -13.44200 -13.04730 -12.57332 -12.30551 -11.87561 -11.68417 -11.47236 -11.42755 -10.97532 -10.91720 -10.88791 -10.69817 -10.32692 -10.22101 -10.13272 -9.99380 -9.78936 -9.46399 -9.24746 -8.76159 -6.84660 -5.69733 -2.96779 3.47308 3.51792 3.52586 4.64359 5.03880 5.06111 5.17466 5.44560 5.53887 5.64209 5.70408 5.79669 5.86346 5.91530 5.98810 6.09830 6.10836 6.16993 6.21883 6.23063 6.30597 6.35672 6.39357 6.50941 6.60189 6.64346 6.72908 6.84787 6.85608 7.03441 7.13524 7.27781 7.76345 8.49801 9.60348 10.20948 10.55499 11.53166 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034825 B = 0.009337 C = 0.008145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.821719 B = 2997.977241 C = 3436.935804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.104 4.104 6 C -0.066 4.066 7 C -0.138 4.138 8 C -0.141 4.141 9 C -0.122 4.122 10 C 0.183 3.817 11 H 0.047 0.953 12 N -0.723 5.723 13 C -0.232 4.232 14 H 0.068 0.932 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.287 1.287 21 H 0.046 0.954 22 H 0.038 0.962 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.382 0.618 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -4.546 11.789 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.067 4.067 7 C -0.196 4.196 8 C -0.198 4.198 9 C -0.162 4.162 10 C 0.073 3.927 11 H 0.065 0.935 12 N -0.364 5.364 13 C -0.363 4.363 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.735 3.265 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.214 1.214 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.216 0.784 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.154 -4.659 11.624 13.543 hybrid contribution -0.089 -0.135 -1.000 1.013 sum 5.065 -4.794 10.624 12.709 Atomic orbital electron populations 1.21728 0.95379 1.01264 1.01208 1.21365 0.95689 0.99533 0.94977 0.91927 1.21604 0.95211 1.00647 0.97477 1.21558 0.95806 1.00036 0.96791 1.20571 0.94414 0.95536 0.96146 1.21858 0.95599 1.01225 1.00906 1.21938 1.01751 0.95526 1.00631 1.22289 0.99329 0.99287 0.95292 1.20275 0.90889 0.95407 0.86125 0.93463 1.42434 1.77745 1.10763 1.05412 1.19191 1.35799 0.93829 0.87493 0.91435 1.24703 1.02530 0.95976 0.97931 1.69651 1.51125 1.08717 1.28878 0.86318 0.77709 0.78611 0.83873 1.21398 1.21792 1.21418 0.93492 0.94334 0.91311 0.92826 0.91990 0.92401 0.92908 0.93488 0.92936 0.93053 0.91861 0.93030 0.93721 0.92302 0.92948 0.78392 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.03 37.16 0.34 -2.06 16 2 C -0.10 -1.65 2.30 -90.62 -0.21 -1.86 16 3 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.11 -1.57 4.93 -26.73 -0.13 -1.70 16 5 C -0.10 -1.40 4.73 -26.73 -0.13 -1.53 16 6 C -0.07 -0.96 0.77 -154.51 -0.12 -1.08 16 7 C -0.14 -1.81 8.47 37.16 0.31 -1.49 16 8 C -0.14 -1.98 7.78 37.16 0.29 -1.69 16 9 C -0.12 -2.24 4.31 -26.73 -0.12 -2.36 16 10 C 0.18 3.67 1.94 -67.93 -0.13 3.54 16 11 H 0.05 0.99 6.37 -51.93 -0.33 0.66 16 12 N -0.72 -18.21 4.43 -53.42 -0.24 -18.44 16 13 C -0.23 -6.47 9.93 -15.06 -0.15 -6.62 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 15 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 16 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 17 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.38 7.44 -51.93 -0.39 1.00 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.93 4.81 -51.93 -0.25 0.68 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.38 10.29 7.57 -40.82 -0.31 9.98 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 282.65 15.07 4.26 4.26 Total: -1.00 -29.11 282.65 -7.06 -36.17 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.65 Total: 5.48 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.14 Total: -17.40 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.49 Total: -46.19 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.11 -7.06 -36.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642839270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.256 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds