Wall clock time and date at job start Mon Mar 30 2020 02:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47090 * 240.00070 * 2 1 3 5 5 C 1.53001 * 109.47038 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47194 * 60.00033 * 5 4 2 7 7 C 1.53002 * 109.46862 * 59.99650 * 6 5 4 8 8 C 1.52998 * 109.47232 * 179.97438 * 6 5 4 9 9 C 1.52992 * 109.46978 * 300.00024 * 6 5 4 10 10 C 1.53001 * 109.47546 * 60.00031 * 9 6 5 11 11 H 1.09000 * 109.47374 * 179.97438 * 10 9 6 12 12 N 1.46500 * 109.47138 * 59.99710 * 10 9 6 13 13 C 1.36934 * 120.00100 * 73.00123 * 12 10 9 14 14 H 1.07999 * 119.99780 * 359.97438 * 13 12 10 15 15 C 1.38802 * 120.00390 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00429 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46751 * 59.99804 * 17 15 13 19 19 H 1.48497 * 109.47128 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46949 * 299.99973 * 17 15 13 21 21 H 1.09001 * 109.46617 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47056 * 299.99921 * 1 2 3 23 23 H 1.09001 * 109.47390 * 59.99961 * 1 2 3 24 24 H 1.09001 * 109.47029 * 59.99748 * 4 2 1 25 25 H 1.09001 * 109.47072 * 299.99973 * 4 2 1 26 26 H 1.09000 * 109.47005 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.47468 * 300.00099 * 5 4 2 28 28 H 1.09003 * 109.46865 * 76.12710 * 7 6 5 29 29 H 1.09002 * 109.47060 * 196.12544 * 7 6 5 30 30 H 1.08998 * 109.47467 * 316.12651 * 7 6 5 31 31 H 1.09001 * 109.46486 * 60.00279 * 8 6 5 32 32 H 1.08995 * 109.47452 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.47425 * 300.00257 * 8 6 5 34 34 H 1.09001 * 109.47281 * 300.00052 * 9 6 5 35 35 H 1.09007 * 109.47301 * 179.97438 * 9 6 5 36 36 H 0.97000 * 119.99983 * 253.00064 * 12 10 9 37 37 H 0.97001 * 120.00426 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 6 3.5710 -2.8842 0.0000 8 6 5.6105 -1.4416 -0.0010 9 6 3.5705 -0.7204 1.2488 10 6 2.0405 -0.7209 1.2492 11 1 1.6772 -0.2075 2.1395 12 7 1.5527 -2.1023 1.2495 13 6 1.6519 -2.8632 2.3836 14 1 2.0901 -2.4451 3.2778 15 6 1.1901 -4.1722 2.3838 16 7 0.6565 -4.6819 1.2939 17 14 1.3261 -5.2105 3.9307 18 1 0.5672 -4.5623 5.0302 19 1 0.7649 -6.5607 3.6715 20 1 2.7538 -5.3337 4.3203 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6766 -0.2074 -2.1392 25 1 1.6766 -1.7489 -1.2493 26 1 3.9333 -1.2341 -2.1398 27 1 3.9330 0.3071 -1.2498 28 1 4.1484 -3.4736 -0.7124 29 1 3.6826 -3.3088 0.9977 30 1 2.5191 -2.8981 -0.2852 31 1 5.9737 -0.4139 -0.0013 32 1 5.9743 -1.9547 0.8892 33 1 5.9735 -1.9556 -0.8909 34 1 3.9335 0.3074 1.2486 35 1 3.9339 -1.2342 2.1389 36 1 1.1594 -2.4779 0.4463 37 1 0.3341 -5.5968 1.2939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642839272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:44 Heat of formation + Delta-G solvation = -16.090324 kcal Electronic energy + Delta-G solvation = -15575.370737 eV Core-core repulsion = 13351.785994 eV Total energy + Delta-G solvation = -2223.584743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88743 -35.85492 -34.91604 -32.60041 -30.22514 -29.31711 -27.70336 -25.85246 -24.58719 -23.07843 -20.79929 -19.41875 -18.81079 -16.57184 -16.27459 -15.65787 -15.29066 -14.88750 -14.78864 -14.25472 -14.15196 -13.75088 -13.17297 -12.92839 -12.86792 -12.76147 -12.50459 -12.44635 -12.30964 -12.22241 -12.10631 -11.53146 -11.39074 -11.33409 -11.17048 -10.90049 -10.63141 -10.43304 -8.66045 -7.82994 -5.03941 1.47738 1.48266 1.53878 2.62383 3.50312 3.88769 3.93005 4.05993 4.25468 4.32574 4.34016 4.55972 4.69422 4.76503 4.80696 4.88193 4.94816 5.02533 5.07824 5.12025 5.13750 5.22568 5.27588 5.30589 5.34020 5.44290 5.48634 5.59498 5.60515 5.74766 5.76770 5.83894 6.12778 6.40654 7.47478 8.26868 8.51084 9.40150 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.012250 C = 0.010327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.205741 B = 2285.187001 C = 2710.559715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.090 0.910 4 C -0.113 4.113 5 C -0.097 4.097 6 C -0.055 4.055 7 C -0.117 4.117 8 C -0.133 4.133 9 C -0.114 4.114 10 C 0.169 3.831 11 H 0.024 0.976 12 N -0.717 5.717 13 C -0.215 4.215 14 H 0.063 0.937 15 C -0.069 4.069 16 N -0.964 5.964 17 Si 0.953 3.047 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.286 1.286 21 H 0.032 0.968 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.013 0.987 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.379 0.621 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 10.463 -4.971 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.108 0.892 4 C -0.150 4.150 5 C -0.135 4.135 6 C -0.055 4.055 7 C -0.175 4.175 8 C -0.191 4.191 9 C -0.154 4.154 10 C 0.061 3.939 11 H 0.042 0.958 12 N -0.361 5.361 13 C -0.348 4.348 14 H 0.081 0.919 15 C -0.261 4.261 16 N -0.616 5.616 17 Si 0.784 3.216 18 H -0.211 1.211 19 H -0.226 1.226 20 H -0.213 1.213 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.215 0.785 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.694 10.422 -4.796 12.808 hybrid contribution -0.261 -1.391 0.920 1.687 sum 5.433 9.032 -3.876 11.230 Atomic orbital electron populations 1.21705 0.95620 1.00806 1.01280 1.21263 0.95369 0.99427 0.94407 0.89225 1.21589 0.96126 0.99976 0.97349 1.21511 0.94931 1.00436 0.96578 1.20393 0.94847 0.95014 0.95223 1.22030 1.01360 0.94986 0.99099 1.21828 0.94578 1.01780 1.00892 1.22058 0.97615 0.99045 0.96695 1.20469 0.92386 0.85340 0.95675 0.95813 1.42878 1.71981 1.09423 1.11840 1.19330 1.30270 0.93593 0.91582 0.91884 1.25197 1.03203 0.98531 0.99161 1.69764 1.48740 1.14879 1.28202 0.85509 0.77317 0.78155 0.80603 1.21108 1.22634 1.21255 0.94914 0.93354 0.91414 0.90768 0.93911 0.92196 0.90543 0.96821 0.95403 0.91366 0.91417 0.94264 0.92697 0.91237 0.94942 0.78451 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.03 71.98 0.65 -3.70 16 2 C -0.09 -2.68 2.48 -10.79 -0.03 -2.71 16 3 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.11 -3.43 4.85 30.60 0.15 -3.28 16 5 C -0.10 -2.73 4.73 30.60 0.14 -2.58 16 6 C -0.05 -1.82 0.77 -52.18 -0.04 -1.86 16 7 C -0.12 -4.98 7.04 71.98 0.51 -4.47 16 8 C -0.13 -3.78 8.41 71.98 0.61 -3.18 16 9 C -0.11 -4.01 4.35 30.59 0.13 -3.88 16 10 C 0.17 6.54 2.58 44.99 0.12 6.66 16 11 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 12 N -0.72 -34.36 2.37 -322.95 -0.77 -35.12 16 13 C -0.22 -11.68 8.16 84.03 0.69 -10.99 16 14 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 15 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 16 N -0.96 -58.05 13.06 21.65 0.28 -57.77 16 17 Si 0.95 46.85 29.55 68.60 2.03 48.88 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 21 H 0.03 1.25 7.15 -2.39 -0.02 1.23 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.59 5.16 -2.39 -0.01 1.58 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.01 0.52 8.04 -2.39 -0.02 0.51 16 29 H 0.03 1.36 6.70 -2.39 -0.02 1.34 16 30 H 0.07 3.20 3.28 -2.39 -0.01 3.19 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.03 1.29 7.97 -2.38 -0.02 1.27 16 36 H 0.38 19.48 4.22 -92.71 -0.39 19.09 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -59.92 272.42 5.57 -54.36 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.63 Total: 23.09 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.39 Total: -33.43 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -0.48 Total: -92.89 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -59.92 5.57 -54.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642839272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.266 kcal (2) G-P(sol) polarization free energy of solvation -59.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds