Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46339 * 2 1 4 4 C 1.52989 * 109.47186 * 119.99781 * 2 1 3 5 5 C 1.53009 * 109.47113 * 60.00442 * 4 2 1 6 6 C 1.52999 * 109.46984 * 179.97438 * 5 4 2 7 7 N 1.46506 * 109.46684 * 175.00142 * 6 5 4 8 8 C 1.36938 * 119.99589 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00325 * 359.97438 * 8 7 6 10 10 C 1.38815 * 119.99408 * 179.97438 * 8 7 6 11 11 N 1.31617 * 120.00325 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99550 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47239 * 120.00535 * 12 10 8 15 15 H 1.48501 * 109.46793 * 240.00116 * 12 10 8 16 16 C 1.53002 * 109.46714 * 59.99678 * 5 4 2 17 17 C 1.52989 * 109.47252 * 299.99863 * 16 5 4 18 18 H 1.08993 * 109.47691 * 300.00392 * 17 16 5 19 19 C 1.53002 * 109.47252 * 179.97438 * 17 16 5 20 20 C 1.52993 * 109.47202 * 240.00583 * 2 1 3 21 21 H 1.08999 * 109.47123 * 299.99759 * 1 2 3 22 22 H 1.09001 * 109.46897 * 60.00115 * 1 2 3 23 23 H 1.08997 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47464 * 300.00250 * 4 2 1 25 25 H 1.09001 * 109.47240 * 179.97438 * 4 2 1 26 26 H 1.09001 * 109.46642 * 299.99845 * 5 4 2 27 27 H 1.09000 * 109.47486 * 55.00077 * 6 5 4 28 28 H 1.09001 * 109.47362 * 294.99354 * 6 5 4 29 29 H 0.96995 * 120.00050 * 359.72237 * 7 6 5 30 30 H 0.97000 * 119.99693 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.47092 * 60.00621 * 16 5 4 32 32 H 1.09006 * 109.46455 * 179.97438 * 16 5 4 33 33 H 1.09001 * 109.47430 * 300.00786 * 19 17 16 34 34 H 1.09007 * 109.46700 * 60.00532 * 19 17 16 35 35 H 1.08998 * 109.47381 * 179.97438 * 19 17 16 36 36 H 1.08998 * 109.47970 * 59.99358 * 20 2 1 37 37 H 1.09001 * 109.47239 * 180.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0407 -2.8851 2.4981 7 7 1.4566 -4.2273 2.5598 8 6 1.7701 -5.0633 3.5980 9 1 2.4482 -4.7334 4.3712 10 6 1.2163 -6.3348 3.6567 11 7 0.3903 -6.7370 2.7143 12 14 1.6445 -7.4756 5.0727 13 1 2.5877 -6.7904 5.9924 14 1 0.4070 -7.8346 5.8108 15 1 2.2788 -8.7084 4.5406 16 6 2.0402 -2.8849 -0.0001 17 6 1.5301 -2.1637 -1.2493 18 1 0.4402 -2.1637 -1.2493 19 6 2.0407 -2.8845 -2.4986 20 6 2.0400 -0.7211 -1.2493 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6767 -0.2074 2.1392 25 1 3.1300 -0.7216 1.2490 26 1 0.4401 -2.1637 1.2492 27 1 1.7526 -2.3224 3.3861 28 1 3.1270 -2.9634 2.4540 29 1 0.8444 -4.5221 1.8676 30 1 0.0030 -7.6254 2.7556 31 1 3.1301 -2.8849 -0.0001 32 1 1.6772 -3.9128 0.0001 33 1 3.1307 -2.8841 -2.4983 34 1 1.6777 -3.9123 -2.4988 35 1 1.6770 -2.3709 -3.3885 36 1 1.6767 -0.2074 -2.1393 37 1 3.1301 -0.7215 -1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = -46.304217 kcal Electronic energy + Delta-G solvation = -14635.670174 eV Core-core repulsion = 12410.775258 eV Total energy + Delta-G solvation = -2224.894916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44940 -36.66472 -34.14986 -33.84419 -31.51857 -27.62639 -27.33480 -26.97746 -24.51698 -22.20527 -21.45771 -19.59486 -19.04807 -16.70864 -16.29071 -16.00492 -15.45110 -15.22995 -14.95905 -14.71170 -14.29077 -13.78017 -13.43275 -13.25294 -13.01436 -12.84360 -12.57126 -12.47597 -12.38976 -12.08226 -11.98465 -11.77321 -11.75323 -11.61333 -11.09257 -10.94729 -10.74088 -10.65681 -8.99638 -7.96099 -5.24753 1.45469 1.46827 1.57094 2.55055 3.36884 3.75243 3.82492 3.84146 4.08540 4.25751 4.36806 4.45045 4.49468 4.54082 4.64676 4.74227 4.86752 4.89415 4.91431 4.96909 5.04547 5.08610 5.14047 5.19958 5.23679 5.27559 5.43525 5.43814 5.47741 5.50313 5.56715 5.65496 5.74143 6.26603 7.32306 8.09650 8.33713 9.27814 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044383 B = 0.007065 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.722267 B = 3962.034529 C = 4272.741715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 H 0.086 0.914 4 C -0.101 4.101 5 C -0.084 4.084 6 C 0.154 3.846 7 N -0.744 5.744 8 C -0.247 4.247 9 H 0.073 0.927 10 C -0.077 4.077 11 N -0.970 5.970 12 Si 0.975 3.025 13 H -0.267 1.267 14 H -0.291 1.291 15 H -0.292 1.292 16 C -0.098 4.098 17 C -0.091 4.091 18 H 0.065 0.935 19 C -0.144 4.144 20 C -0.102 4.102 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.374 0.626 30 H 0.251 0.749 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 14.197 -8.635 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 H 0.104 0.896 4 C -0.139 4.139 5 C -0.103 4.103 6 C 0.028 3.972 7 N -0.387 5.387 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.269 4.269 11 N -0.621 5.621 12 Si 0.804 3.196 13 H -0.191 1.191 14 H -0.218 1.218 15 H -0.219 1.219 16 C -0.135 4.135 17 C -0.109 4.109 18 H 0.083 0.917 19 C -0.202 4.202 20 C -0.139 4.139 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.206 0.794 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.976 14.171 -8.472 16.777 hybrid contribution -0.192 -1.281 0.687 1.466 sum 2.785 12.890 -7.785 15.314 Atomic orbital electron populations 1.21935 0.95518 1.01494 1.01844 1.21080 0.95833 0.99350 0.94132 0.89601 1.21523 1.00583 0.93344 0.98460 1.21235 0.99820 0.95541 0.93699 1.20883 0.95247 0.85098 0.96015 1.42613 1.55116 1.12688 1.28256 1.19707 1.21439 0.95038 1.01739 0.90874 1.25596 1.00456 0.99393 1.01466 1.69833 1.36338 1.19530 1.36359 0.85043 0.77237 0.78594 0.78712 1.19108 1.21845 1.21868 1.21484 0.99872 0.97949 0.94237 1.21156 1.00162 0.95672 0.93931 0.91675 1.21806 1.01169 0.99776 0.97410 1.21587 1.00556 0.93962 0.97795 0.92847 0.91655 0.93564 0.91899 0.91731 0.92200 0.96762 0.96731 0.79405 0.93987 0.92839 0.94807 0.92614 0.94055 0.91202 0.90610 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.50 71.98 0.61 -2.62 16 2 C -0.09 -1.80 3.19 -10.80 -0.03 -1.83 16 3 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 4 C -0.10 -2.63 4.73 30.59 0.14 -2.49 16 5 C -0.08 -2.86 1.95 -10.79 -0.02 -2.88 16 6 C 0.15 6.59 5.65 86.38 0.49 7.08 16 7 N -0.74 -40.03 5.33 -343.44 -1.83 -41.86 16 8 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 9 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 11 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 12 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 15 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 16 C -0.10 -3.26 4.36 30.59 0.13 -3.12 16 17 C -0.09 -2.35 2.45 -10.79 -0.03 -2.38 16 18 H 0.06 1.76 6.43 -2.39 -0.02 1.74 16 19 C -0.14 -3.40 9.19 71.98 0.66 -2.73 16 20 C -0.10 -2.10 4.73 30.60 0.14 -1.96 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 1.17 4.81 -2.39 -0.01 1.15 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 2.17 6.43 -2.39 -0.02 2.16 16 27 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.37 21.28 6.86 -92.71 -0.64 20.65 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.36 7.19 -2.38 -0.02 1.34 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -64.73 283.20 4.27 -60.47 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.38 Total: 23.44 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 3.41 Total: -30.68 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -1.55 Total: -102.69 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -64.73 4.27 -60.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.161 kcal (2) G-P(sol) polarization free energy of solvation -64.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds