Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52690 * 1 3 3 H 1.11154 * 106.66675 * 2 1 4 4 C 1.52211 * 110.83495 * 116.07797 * 2 1 3 5 5 C 1.52739 * 111.10533 * 74.86058 * 4 2 1 6 6 H 1.08675 * 110.33378 * 298.59000 * 5 4 2 7 7 C 1.53345 * 109.14888 * 179.00011 * 5 4 2 8 8 N 1.46499 * 109.46778 * 66.02791 * 7 5 4 9 9 C 1.36939 * 120.00138 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99977 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00338 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00018 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47167 * 60.00111 * 13 11 9 15 15 H 1.48497 * 109.47195 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47370 * 300.00149 * 13 11 9 17 17 C 1.52892 * 108.98528 * 59.98041 * 5 4 2 18 18 C 1.52569 * 110.14190 * 298.04413 * 17 5 4 19 19 H 1.10967 * 107.00120 * 172.73150 * 18 17 5 20 20 C 1.52456 * 111.05446 * 289.24656 * 18 17 5 21 21 C 1.51816 * 111.94662 * 243.05811 * 2 1 3 22 22 H 1.09000 * 109.46499 * 183.60475 * 1 2 3 23 23 H 1.09004 * 109.46956 * 63.60708 * 1 2 3 24 24 H 1.09003 * 109.46943 * 303.60267 * 1 2 3 25 25 H 1.09379 * 109.50037 * 195.50646 * 4 2 1 26 26 H 1.09371 * 109.50572 * 314.21251 * 4 2 1 27 27 H 1.08995 * 109.47453 * 186.02593 * 7 5 4 28 28 H 1.08996 * 109.47233 * 306.02948 * 7 5 4 29 29 H 0.97004 * 120.00414 * 0.02562 * 8 7 5 30 30 H 0.97000 * 119.99761 * 180.02562 * 12 11 9 31 31 H 1.09185 * 109.30225 * 177.66836 * 17 5 4 32 32 H 1.09164 * 109.33032 * 58.47084 * 17 5 4 33 33 H 1.08991 * 109.46858 * 179.22165 * 20 18 17 34 34 H 1.09006 * 109.46747 * 299.22390 * 20 18 17 35 35 H 1.09002 * 109.46974 * 59.22045 * 20 18 17 36 36 H 1.10027 * 108.86172 * 41.80839 * 21 2 1 37 37 H 1.10052 * 108.83502 * 157.55968 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5269 0.0000 0.0000 3 1 1.8457 1.0648 0.0000 4 6 2.0683 -0.6254 1.2778 5 6 1.9161 -2.1450 1.2537 6 1 0.8665 -2.4183 1.1846 7 6 2.4967 -2.7292 2.5472 8 7 1.6853 -2.2941 3.6867 9 6 2.0148 -2.6940 4.9543 10 1 2.8725 -3.3305 5.1139 11 6 1.2463 -2.2813 6.0341 12 7 0.2006 -1.5060 5.8396 13 14 1.6954 -2.8275 7.7630 14 1 3.0628 -2.3514 8.0931 15 1 0.7247 -2.2558 8.7306 16 1 1.6554 -4.3099 7.8400 17 6 2.6923 -2.7038 0.0609 18 6 2.1176 -2.1573 -1.2425 19 1 2.7946 -2.4851 -2.0583 20 6 0.7463 -2.7579 -1.5308 21 6 2.0943 -0.6380 -1.2553 22 1 -0.3632 -1.0257 0.0646 23 1 -0.3633 0.4568 -0.9206 24 1 -0.3633 0.5688 0.8560 25 1 3.1267 -0.3724 1.3880 26 1 1.5263 -0.2241 2.1388 27 1 2.4886 -3.8176 2.4900 28 1 3.5210 -2.3797 2.6760 29 1 0.9146 -1.7227 3.5434 30 1 -0.3362 -1.2173 6.5942 31 1 2.6213 -3.7933 0.0625 32 1 3.7420 -2.4164 0.1461 33 1 0.3546 -2.3404 -2.4583 34 1 0.8369 -3.8398 -1.6290 35 1 0.0672 -2.5231 -0.7112 36 1 1.5074 -0.3001 -2.1225 37 1 3.1200 -0.2699 -1.4085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857480.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = -28.903101 kcal Electronic energy + Delta-G solvation = -14709.002715 eV Core-core repulsion = 12484.862368 eV Total energy + Delta-G solvation = -2224.140347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.11940 -34.80861 -32.77971 -32.19961 -29.74120 -27.22482 -25.90158 -25.21367 -22.64325 -20.92580 -20.39617 -17.70820 -17.04664 -15.44286 -14.71473 -14.28293 -14.06376 -13.81921 -13.52759 -13.10270 -12.86535 -12.70021 -12.28604 -12.01584 -11.51170 -11.28365 -11.07142 -10.81385 -10.76497 -10.75940 -10.55728 -10.50930 -10.12278 -9.79272 -9.74665 -9.45381 -9.36488 -8.78733 -6.82692 -5.69813 -2.97222 3.48037 3.51975 3.53309 4.64982 4.85762 4.89684 4.91233 5.38455 5.42518 5.43511 5.54240 5.61136 5.68836 5.71236 5.82626 5.90960 5.98195 6.03205 6.11409 6.20960 6.23319 6.25341 6.32835 6.34779 6.44912 6.55990 6.63636 6.67186 6.72871 6.87121 7.01575 7.11219 7.75840 8.49977 9.60593 10.21191 10.56056 11.53279 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.007069 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.065956 B = 3960.088181 C = 4200.867847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.052 0.948 4 C -0.103 4.103 5 C -0.090 4.090 6 H 0.072 0.928 7 C 0.155 3.845 8 N -0.732 5.732 9 C -0.237 4.237 10 H 0.068 0.932 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.906 3.094 14 H -0.287 1.287 15 H -0.291 1.291 16 H -0.287 1.287 17 C -0.104 4.104 18 C -0.083 4.083 19 H 0.052 0.948 20 C -0.148 4.148 21 C -0.100 4.100 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 0.962 -14.905 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.071 0.929 4 C -0.141 4.141 5 C -0.109 4.109 6 H 0.090 0.910 7 C 0.028 3.972 8 N -0.376 5.376 9 C -0.368 4.368 10 H 0.086 0.914 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.214 1.214 17 C -0.142 4.142 18 C -0.102 4.102 19 H 0.071 0.929 20 C -0.205 4.205 21 C -0.137 4.137 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.522 0.901 -14.772 15.013 hybrid contribution 0.020 -0.075 0.981 0.984 sum 2.542 0.826 -13.791 14.048 Atomic orbital electron populations 1.21888 0.95407 1.02237 1.00929 1.20815 0.95654 0.98930 0.94928 0.92906 1.21397 1.00854 0.95235 0.96568 1.21190 1.00092 0.95161 0.94447 0.91014 1.20802 0.94039 0.95873 0.86526 1.42384 1.33087 1.60378 1.01731 1.19217 1.09060 1.24462 0.84103 0.91374 1.24722 0.97973 1.00610 0.97845 1.69653 1.19018 1.39631 1.30099 0.86274 0.77301 0.78032 0.84635 1.21356 1.21725 1.21361 1.21458 0.99261 0.99752 0.93768 1.20818 0.96928 0.94912 0.97512 0.92910 1.21836 0.97288 1.00079 1.01313 1.21255 1.00475 0.94737 0.97246 0.92141 0.93547 0.92550 0.92725 0.90950 0.96687 0.96645 0.78241 0.93572 0.92287 0.92297 0.93277 0.93034 0.91787 0.92855 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.88 37.00 0.33 -1.64 16 2 C -0.08 -1.15 2.58 -91.78 -0.24 -1.39 16 3 H 0.05 0.69 8.29 -50.69 -0.42 0.27 16 4 C -0.10 -1.70 4.47 -27.27 -0.12 -1.82 16 5 C -0.09 -1.53 2.03 -90.63 -0.18 -1.71 16 6 H 0.07 1.29 6.22 -52.11 -0.32 0.96 16 7 C 0.16 3.28 5.62 -3.86 -0.02 3.26 16 8 N -0.73 -19.17 5.33 -59.73 -0.32 -19.48 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 C -0.10 -1.46 4.62 -27.01 -0.12 -1.58 16 18 C -0.08 -1.00 2.60 -91.65 -0.24 -1.24 16 19 H 0.05 0.58 8.28 -50.80 -0.42 0.16 16 20 C -0.15 -1.71 8.86 36.88 0.33 -1.39 16 21 C -0.10 -1.19 4.81 -27.87 -0.13 -1.32 16 22 H 0.06 0.83 4.92 -51.93 -0.26 0.58 16 23 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.90 8.17 -51.71 -0.42 0.48 16 26 H 0.07 1.40 7.17 -51.72 -0.37 1.02 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.38 10.47 6.89 -40.82 -0.28 10.19 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.06 0.81 8.15 -51.82 -0.42 0.39 16 32 H 0.06 0.81 8.16 -51.84 -0.42 0.39 16 33 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.82 4.63 -51.93 -0.24 0.58 16 36 H 0.05 0.58 7.99 -51.34 -0.41 0.17 16 37 H 0.05 0.60 8.23 -51.33 -0.42 0.18 16 LS Contribution 281.21 15.07 4.24 4.24 Total: -1.00 -30.13 281.21 -7.52 -37.65 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.49 Total: 4.22 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.65 Total: -16.41 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.41 Total: -47.58 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.13 -7.52 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857480.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.749 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds