Wall clock time and date at job start Mon Mar 30 2020 03:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 112.78427 * 2 1 4 4 C 1.53508 * 113.47809 * 229.18662 * 2 1 3 5 5 C 1.53515 * 83.57750 * 271.25756 * 4 2 1 6 6 C 1.52994 * 113.47966 * 219.20847 * 5 4 2 7 7 C 1.53006 * 113.47502 * 88.74011 * 5 4 2 8 8 N 1.47481 * 87.93066 * 333.97619 * 5 4 2 9 9 C 1.46902 * 110.99878 * 138.70187 * 8 5 4 10 10 C 1.52997 * 109.47211 * 76.16034 * 9 8 5 11 11 C 1.53000 * 109.47092 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47258 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.37866 * 120.00385 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99730 * 0.27243 * 14 12 11 16 16 Si 1.86803 * 120.00285 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47089 * 60.00016 * 16 14 12 18 18 H 1.48508 * 109.47050 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46972 * 299.99514 * 16 14 12 20 20 H 1.08995 * 109.47434 * 261.73763 * 1 2 3 21 21 H 1.08995 * 109.47015 * 21.73899 * 1 2 3 22 22 H 1.09000 * 109.47071 * 141.73524 * 1 2 3 23 23 H 1.09004 * 114.17246 * 157.60966 * 4 2 1 24 24 H 1.09002 * 114.17425 * 24.90528 * 4 2 1 25 25 H 1.08998 * 109.47402 * 158.38408 * 6 5 4 26 26 H 1.09007 * 109.47248 * 278.38082 * 6 5 4 27 27 H 1.09002 * 109.47003 * 38.37890 * 6 5 4 28 28 H 1.09000 * 109.47133 * 301.59141 * 7 5 4 29 29 H 1.09003 * 109.46759 * 61.58563 * 7 5 4 30 30 H 1.08996 * 109.46863 * 181.59025 * 7 5 4 31 31 H 1.09000 * 109.47016 * 316.15521 * 9 8 5 32 32 H 1.08997 * 109.46940 * 196.16316 * 9 8 5 33 33 H 1.09004 * 109.46840 * 59.99949 * 10 9 8 34 34 H 1.09003 * 109.46991 * 299.99868 * 10 9 8 35 35 H 1.09000 * 109.47001 * 59.99570 * 11 10 9 36 36 H 1.09003 * 109.47170 * 299.99851 * 11 10 9 37 37 H 0.96995 * 120.00331 * 359.72213 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0050 0.0000 4 6 2.1416 -0.9203 -1.0656 5 6 2.0425 -1.9803 0.0403 6 6 3.2445 -2.9255 0.0882 7 6 0.7043 -2.7221 0.0554 8 7 2.1175 -0.8840 1.0240 9 6 1.1774 -1.1048 2.1310 10 6 1.7383 -2.1739 3.0708 11 6 0.7595 -2.4033 4.2242 12 6 1.3122 -3.4559 5.1502 13 1 2.2660 -3.9157 4.9372 14 6 0.5998 -3.8329 6.2688 15 7 -0.5646 -3.2777 6.5248 16 14 1.2846 -5.1382 7.4163 17 1 2.5905 -4.6847 7.9587 18 1 0.3346 -5.3608 8.5359 19 1 1.4732 -6.4063 6.6670 20 1 -0.3634 -0.1477 1.0169 21 1 -0.3633 0.9545 -0.3806 22 1 -0.3633 -0.8069 -0.6364 23 1 3.1628 -0.6617 -1.3458 24 1 1.4921 -1.1058 -1.9212 25 1 3.3115 -3.3784 1.0774 26 1 3.1223 -3.7072 -0.6617 27 1 4.1563 -2.3645 -0.1171 28 1 -0.1068 -2.0057 0.1849 29 1 0.5728 -3.2533 -0.8873 30 1 0.6938 -3.4358 0.8792 31 1 0.2189 -1.4376 1.7328 32 1 1.0388 -0.1740 2.6810 33 1 2.6968 -1.8409 3.4690 34 1 1.8769 -3.1047 2.5208 35 1 -0.1992 -2.7360 3.8263 36 1 0.6213 -1.4724 4.7741 37 1 -0.9204 -2.6001 5.9288 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685969818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:01 Heat of formation + Delta-G solvation = 30.266597 kcal Electronic energy + Delta-G solvation = -14781.300577 eV Core-core repulsion = 12559.726021 eV Total energy + Delta-G solvation = -2221.574557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.27396 -34.48815 -32.21113 -31.73597 -29.24446 -28.59007 -26.60055 -24.90735 -22.38589 -20.95936 -20.41143 -17.75773 -16.65256 -16.04126 -15.42212 -15.30316 -14.30793 -13.68614 -13.10754 -12.90612 -12.63271 -12.59910 -12.28412 -12.10805 -11.78066 -11.63115 -11.37399 -11.03398 -10.92203 -10.66151 -10.54416 -10.41524 -10.07452 -9.79158 -9.68438 -9.50028 -8.50628 -8.47223 -8.28133 -6.31938 -4.00143 3.46165 3.48523 3.67066 4.12837 4.46298 4.58510 4.83903 5.07328 5.16521 5.24160 5.27280 5.45146 5.47366 5.68527 5.71081 5.74426 5.79554 5.89184 5.92634 5.99153 6.02130 6.06022 6.25516 6.28856 6.38459 6.43652 6.65511 6.73177 6.84626 7.08135 7.41394 7.49611 7.62023 8.28638 8.51613 8.93784 9.72054 11.08775 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048549 B = 0.006924 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.604379 B = 4043.129149 C = 4327.215691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.020 3.980 3 H 0.088 0.912 4 C -0.136 4.136 5 C 0.054 3.946 6 C -0.128 4.128 7 C -0.180 4.180 8 N -0.460 5.460 9 C 0.006 3.994 10 C -0.095 4.095 11 C 0.010 3.990 12 C -0.599 4.599 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 1.068 2.932 17 H -0.288 1.288 18 H -0.282 1.282 19 H -0.288 1.288 20 H 0.078 0.922 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.003 0.997 36 H 0.005 0.995 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 3.991 -15.131 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.089 4.089 3 H 0.106 0.894 4 C -0.174 4.174 5 C -0.036 4.036 6 C -0.186 4.186 7 C -0.237 4.237 8 N -0.182 5.182 9 C -0.122 4.122 10 C -0.133 4.133 11 C -0.028 4.028 12 C -0.637 4.637 13 H 0.066 0.934 14 C -0.190 4.190 15 N -0.552 5.552 16 Si 0.896 3.104 17 H -0.214 1.214 18 H -0.208 1.208 19 H -0.215 1.215 20 H 0.097 0.903 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.468 3.319 -13.366 14.202 hybrid contribution -0.468 0.703 -1.636 1.841 sum 3.000 4.022 -15.002 15.819 Atomic orbital electron populations 1.22586 0.95545 1.02236 1.03815 1.23098 0.93802 0.98669 0.93357 0.89432 1.23431 1.01490 0.96497 0.95982 1.22527 0.95766 0.92786 0.92516 1.21657 0.96510 0.98190 1.02230 1.22575 0.97000 1.01606 1.02558 1.69236 1.40036 1.05710 1.03173 1.22962 0.95410 1.00450 0.93331 1.21469 0.99858 0.95880 0.96045 1.19196 0.94225 0.96461 0.92906 1.22066 1.07413 1.23785 1.10462 0.93411 1.25849 0.95010 1.00357 0.97794 1.70782 1.17973 1.26625 1.39811 0.83562 0.75414 0.75377 0.76015 1.21444 1.20774 1.21482 0.90323 0.92315 0.91044 0.89356 0.91093 0.91760 0.92780 0.92383 0.90077 0.92266 0.91091 0.92636 0.91552 0.92872 0.93134 0.97836 0.97673 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 8.10 37.16 0.30 -1.88 16 2 C 0.02 0.26 4.78 -71.43 -0.34 -0.08 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.14 -1.60 7.15 -26.20 -0.19 -1.78 16 5 C 0.05 0.76 0.87 -135.32 -0.12 0.65 16 6 C -0.13 -1.77 9.42 37.15 0.35 -1.42 16 7 C -0.18 -2.49 7.05 37.16 0.26 -2.23 16 8 N -0.46 -7.34 6.19 -220.56 -1.37 -8.71 16 9 C 0.01 0.11 3.41 -3.82 -0.01 0.10 16 10 C -0.09 -2.07 5.05 -26.73 -0.14 -2.21 16 11 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 12 C -0.60 -17.69 9.11 -34.44 -0.31 -18.01 16 13 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 14 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 15 N -0.92 -28.75 13.65 55.43 0.76 -28.00 16 16 Si 1.07 25.97 29.90 -169.99 -5.08 20.88 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H 0.08 1.06 5.24 -51.93 -0.27 0.78 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.07 0.79 5.48 -51.93 -0.28 0.51 16 23 H 0.09 0.98 8.00 -51.93 -0.42 0.57 16 24 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 25 H 0.06 1.01 6.84 -51.93 -0.35 0.66 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.76 7.97 -51.93 -0.41 0.34 16 28 H 0.08 1.09 3.15 -51.93 -0.16 0.93 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.14 6.79 -51.93 -0.35 0.79 16 31 H 0.06 0.97 3.79 -51.93 -0.20 0.77 16 32 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.10 5.31 -51.93 -0.28 0.82 16 35 H 0.00 0.09 8.00 -51.93 -0.42 -0.32 16 36 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 37 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -31.23 276.06 -7.95 -39.18 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.01 Total: -1.09 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -0.41 Total: -26.43 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.61 Total: -36.70 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.23 -7.95 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.446 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds