Wall clock time and date at job start Mon Mar 30 2020 03:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 112.78427 * 2 1 4 4 C 1.53508 * 113.47809 * 229.18662 * 2 1 3 5 5 C 1.53515 * 83.57750 * 271.25756 * 4 2 1 6 6 C 1.52994 * 113.47966 * 219.20847 * 5 4 2 7 7 C 1.53006 * 113.47502 * 88.74011 * 5 4 2 8 8 N 1.47481 * 87.93066 * 333.97619 * 5 4 2 9 9 C 1.46902 * 110.99878 * 138.70187 * 8 5 4 10 10 C 1.52997 * 109.47211 * 76.16034 * 9 8 5 11 11 C 1.53000 * 109.47092 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47258 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.37866 * 120.00385 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99730 * 0.27243 * 14 12 11 16 16 Si 1.86803 * 120.00285 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47089 * 60.00016 * 16 14 12 18 18 H 1.48508 * 109.47050 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46972 * 299.99514 * 16 14 12 20 20 H 1.08995 * 109.47434 * 261.73763 * 1 2 3 21 21 H 1.08995 * 109.47015 * 21.73899 * 1 2 3 22 22 H 1.09000 * 109.47071 * 141.73524 * 1 2 3 23 23 H 1.09004 * 114.17246 * 157.60966 * 4 2 1 24 24 H 1.09002 * 114.17425 * 24.90528 * 4 2 1 25 25 H 1.08998 * 109.47402 * 158.38408 * 6 5 4 26 26 H 1.09007 * 109.47248 * 278.38082 * 6 5 4 27 27 H 1.09002 * 109.47003 * 38.37890 * 6 5 4 28 28 H 1.09000 * 109.47133 * 301.59141 * 7 5 4 29 29 H 1.09003 * 109.46759 * 61.58563 * 7 5 4 30 30 H 1.08996 * 109.46863 * 181.59025 * 7 5 4 31 31 H 1.09000 * 109.47016 * 316.15521 * 9 8 5 32 32 H 1.08997 * 109.46940 * 196.16316 * 9 8 5 33 33 H 1.09004 * 109.46840 * 59.99949 * 10 9 8 34 34 H 1.09003 * 109.46991 * 299.99868 * 10 9 8 35 35 H 1.09000 * 109.47001 * 59.99570 * 11 10 9 36 36 H 1.09003 * 109.47170 * 299.99851 * 11 10 9 37 37 H 0.96995 * 120.00331 * 359.72213 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0050 0.0000 4 6 2.1416 -0.9203 -1.0656 5 6 2.0425 -1.9803 0.0403 6 6 3.2445 -2.9255 0.0882 7 6 0.7043 -2.7221 0.0554 8 7 2.1175 -0.8840 1.0240 9 6 1.1774 -1.1048 2.1310 10 6 1.7383 -2.1739 3.0708 11 6 0.7595 -2.4033 4.2242 12 6 1.3122 -3.4559 5.1502 13 1 2.2660 -3.9157 4.9372 14 6 0.5998 -3.8329 6.2688 15 7 -0.5646 -3.2777 6.5248 16 14 1.2846 -5.1382 7.4163 17 1 2.5905 -4.6847 7.9587 18 1 0.3346 -5.3608 8.5359 19 1 1.4732 -6.4063 6.6670 20 1 -0.3634 -0.1477 1.0169 21 1 -0.3633 0.9545 -0.3806 22 1 -0.3633 -0.8069 -0.6364 23 1 3.1628 -0.6617 -1.3458 24 1 1.4921 -1.1058 -1.9212 25 1 3.3115 -3.3784 1.0774 26 1 3.1223 -3.7072 -0.6617 27 1 4.1563 -2.3645 -0.1171 28 1 -0.1068 -2.0057 0.1849 29 1 0.5728 -3.2533 -0.8873 30 1 0.6938 -3.4358 0.8792 31 1 0.2189 -1.4376 1.7328 32 1 1.0388 -0.1740 2.6810 33 1 2.6968 -1.8409 3.4690 34 1 1.8769 -3.1047 2.5208 35 1 -0.1992 -2.7360 3.8263 36 1 0.6213 -1.4724 4.7741 37 1 -0.9204 -2.6001 5.9288 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:01 Heat of formation + Delta-G solvation = 9.506362 kcal Electronic energy + Delta-G solvation = -14782.200809 eV Core-core repulsion = 12559.726021 eV Total energy + Delta-G solvation = -2222.474788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.40529 -36.51817 -34.11981 -32.84471 -30.54538 -30.00580 -27.70230 -26.74277 -24.24558 -22.20636 -21.99021 -19.16669 -18.58178 -17.27137 -16.77243 -16.37621 -15.78678 -15.65195 -14.94268 -14.42671 -14.04792 -13.74693 -13.62383 -13.44885 -13.18221 -12.87951 -12.67959 -12.49885 -12.29326 -12.16373 -12.06589 -11.95687 -11.86864 -11.50202 -11.22747 -10.78626 -10.64312 -10.57096 -9.71338 -8.72814 -6.42969 1.49620 1.58580 1.78399 2.54139 2.99311 3.12259 3.44587 3.78881 3.89577 4.06776 4.11778 4.18862 4.30048 4.36430 4.47582 4.62194 4.69913 4.76298 4.79851 4.82311 4.88903 4.93558 4.95852 4.99362 5.05304 5.13133 5.22970 5.27996 5.39027 5.46561 5.51982 5.63071 5.96770 6.14684 6.20606 6.55023 7.39123 8.68123 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048549 B = 0.006924 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.604379 B = 4043.129149 C = 4327.215691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.018 3.982 3 H 0.094 0.906 4 C -0.117 4.117 5 C 0.044 3.956 6 C -0.127 4.127 7 C -0.178 4.178 8 N -0.481 5.481 9 C 0.021 3.979 10 C -0.079 4.079 11 C 0.013 3.987 12 C -0.621 4.621 13 H 0.047 0.953 14 C -0.039 4.039 15 N -0.937 5.937 16 Si 1.118 2.882 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.049 0.951 35 H -0.011 1.011 36 H -0.015 1.015 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 3.754 -16.792 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.091 4.091 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.046 4.046 6 C -0.185 4.185 7 C -0.235 4.235 8 N -0.203 5.203 9 C -0.108 4.108 10 C -0.116 4.116 11 C -0.024 4.024 12 C -0.659 4.659 13 H 0.065 0.935 14 C -0.236 4.236 15 N -0.574 5.574 16 Si 0.938 3.062 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.076 0.924 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.003 0.997 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.114 3.101 -15.058 15.914 hybrid contribution -0.663 0.812 -1.165 1.567 sum 3.451 3.913 -16.222 17.041 Atomic orbital electron populations 1.22541 0.94686 1.03823 1.02810 1.23244 0.94561 0.98793 0.92546 0.88792 1.23378 1.02488 0.93918 0.95622 1.22704 0.95803 0.93006 0.93091 1.21661 0.96908 0.98748 1.01157 1.22560 0.97126 1.01184 1.02647 1.69218 1.39775 1.07767 1.03560 1.22687 0.96091 0.98349 0.93626 1.21220 0.97873 0.97335 0.95216 1.19117 0.94618 0.94731 0.93978 1.22499 1.07557 1.24494 1.11355 0.93511 1.27497 0.94532 1.01913 0.99651 1.70918 1.19195 1.27280 1.40000 0.82946 0.75489 0.73486 0.74282 1.19464 1.20505 1.19281 0.92449 0.90343 0.89971 0.88377 0.88649 0.94664 0.90770 0.91721 0.89778 0.89757 0.94152 0.91930 0.92568 0.94339 0.93202 0.99246 0.99675 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.10 71.98 0.58 -3.31 16 2 C 0.02 0.42 4.78 42.19 0.20 0.62 16 3 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.12 -2.32 7.15 30.94 0.22 -2.10 16 5 C 0.04 1.16 0.87 0.80 0.00 1.16 16 6 C -0.13 -3.33 9.42 71.98 0.68 -2.65 16 7 C -0.18 -4.65 7.05 71.98 0.51 -4.14 16 8 N -0.48 -14.91 6.19 -851.72 -5.27 -20.18 16 9 C 0.02 0.76 3.41 86.30 0.29 1.06 16 10 C -0.08 -3.55 5.05 30.59 0.15 -3.40 16 11 C 0.01 0.72 4.28 29.85 0.13 0.85 16 12 C -0.62 -37.48 9.11 25.60 0.23 -37.24 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 14 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 15 N -0.94 -59.95 13.65 21.44 0.29 -59.66 16 16 Si 1.12 51.84 29.90 68.60 2.05 53.89 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H 0.06 1.49 5.24 -2.39 -0.01 1.48 16 21 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.58 5.48 -2.39 -0.01 1.57 16 23 H 0.10 1.80 8.00 -2.39 -0.02 1.79 16 24 H 0.10 1.49 7.93 -2.39 -0.02 1.47 16 25 H 0.03 1.11 6.84 -2.39 -0.02 1.09 16 26 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.06 1.57 7.97 -2.39 -0.02 1.55 16 28 H 0.08 2.13 3.15 -2.39 -0.01 2.13 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.29 6.79 -2.39 -0.02 1.27 16 31 H 0.06 2.20 3.79 -2.39 -0.01 2.20 16 32 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 2.24 5.31 -2.39 -0.01 2.23 16 35 H -0.01 -0.62 8.00 -2.39 -0.02 -0.64 16 36 H -0.02 -0.88 8.01 -2.39 -0.02 -0.90 16 37 H 0.25 16.49 7.22 -92.71 -0.67 15.83 16 Total: -1.00 -67.97 276.06 1.66 -66.30 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.13 Total: 10.69 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 3.46 Total: -51.04 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -4.98 Total: -79.84 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.05 Total: 53.89 kcal Total: -67.97 1.66 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds