Wall clock time and date at job start Mon Mar 30 2020 02:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.53667 * 2 1 4 4 C 1.54890 * 110.48350 * 237.39069 * 2 1 3 5 5 C 1.54892 * 102.74374 * 203.37961 * 4 2 1 6 6 C 1.54260 * 104.19998 * 37.94429 * 5 4 2 7 7 C 1.53879 * 106.59539 * 336.38864 * 6 5 4 8 8 H 1.08993 * 110.03064 * 119.28964 * 7 6 5 9 9 N 1.46906 * 110.03376 * 240.66778 * 7 6 5 10 10 C 1.46900 * 110.99842 * 54.37240 * 9 7 6 11 11 C 1.46901 * 110.99869 * 290.42783 * 9 7 6 12 12 C 1.53001 * 109.47236 * 190.00206 * 11 9 7 13 13 C 1.50700 * 109.47377 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99471 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99862 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00290 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99685 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47210 * 90.00041 * 17 15 13 19 19 H 1.48502 * 109.46932 * 210.00108 * 17 15 13 20 20 H 1.48497 * 109.47504 * 329.99984 * 17 15 13 21 21 H 1.09004 * 109.47005 * 181.15706 * 1 2 3 22 22 H 1.08999 * 109.47063 * 301.15675 * 1 2 3 23 23 H 1.09004 * 109.47359 * 61.15573 * 1 2 3 24 24 H 1.08999 * 110.75473 * 85.06915 * 4 2 1 25 25 H 1.08997 * 110.75690 * 321.68875 * 4 2 1 26 26 H 1.09005 * 110.48531 * 156.62730 * 5 4 2 27 27 H 1.09002 * 110.48496 * 279.12887 * 5 4 2 28 28 H 1.08999 * 110.03788 * 95.67000 * 6 5 4 29 29 H 1.09003 * 110.03424 * 217.06216 * 6 5 4 30 30 H 1.09005 * 109.46628 * 53.37215 * 10 9 7 31 31 H 1.09000 * 109.46850 * 173.36208 * 10 9 7 32 32 H 1.08998 * 109.47646 * 293.36702 * 10 9 7 33 33 H 1.09004 * 109.47180 * 309.99516 * 11 9 7 34 34 H 1.08997 * 109.47556 * 69.99568 * 11 9 7 35 35 H 1.09004 * 109.46472 * 299.99743 * 12 11 9 36 36 H 1.08997 * 109.47369 * 59.99247 * 12 11 9 37 37 H 0.96994 * 120.00184 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7819 -1.2222 5 6 3.4906 -1.1979 -0.7600 6 6 3.3166 -1.5406 0.7339 7 6 2.0699 -0.7789 1.2172 8 1 1.3177 -1.4823 1.5740 9 7 2.4352 0.1544 2.2913 10 6 3.5202 1.0484 1.8653 11 6 2.8002 -0.5697 3.5162 12 6 2.9310 0.4212 4.6746 13 6 3.3048 -0.3216 5.9314 14 1 3.4355 -1.3934 5.9065 15 6 3.4798 0.3671 7.1130 16 7 3.3201 1.6721 7.1434 17 14 3.9424 -0.5538 8.6710 18 1 5.4214 -0.6260 8.7827 19 1 3.3911 0.1606 9.8504 20 1 3.3824 -1.9282 8.6185 21 1 -0.3633 -1.0275 0.0208 22 1 -0.3633 0.5317 0.8794 23 1 -0.3634 0.4958 -0.9002 24 1 2.1251 -0.1380 -2.1001 25 1 1.4580 -1.6600 -1.4223 26 1 3.8316 -2.0721 -1.3148 27 1 4.1902 -0.3714 -0.8849 28 1 3.1692 -2.6136 0.8563 29 1 4.1932 -1.2178 1.2957 30 1 3.2432 1.5363 0.9308 31 1 3.6910 1.8036 2.6326 32 1 4.4314 0.4690 1.7166 33 1 2.0268 -1.3015 3.7498 34 1 3.7510 -1.0812 3.3665 35 1 3.7044 1.1530 4.4410 36 1 1.9802 0.9327 4.8244 37 1 3.4436 2.1566 7.9745 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690941985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:13 Heat of formation + Delta-G solvation = -36.740594 kcal Electronic energy + Delta-G solvation = -14541.583723 eV Core-core repulsion = 12317.103517 eV Total energy + Delta-G solvation = -2224.480206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53227 -36.79923 -34.89510 -32.11509 -31.54514 -28.83600 -27.38968 -26.18783 -24.56178 -22.26334 -21.01554 -19.97588 -18.65137 -17.22148 -16.48760 -16.32929 -15.69833 -15.38979 -14.90092 -14.33303 -14.20720 -13.85859 -13.75714 -13.25789 -13.01134 -12.83300 -12.61962 -12.48081 -12.34205 -12.04135 -11.88250 -11.76130 -11.55996 -11.40401 -11.30670 -11.24763 -11.01512 -10.54674 -9.05928 -8.20579 -6.32245 1.39143 1.41057 1.52238 2.39780 3.12389 3.13181 3.67333 3.78951 3.99495 4.31364 4.33939 4.44875 4.54244 4.57286 4.63455 4.67450 4.69161 4.77110 4.82435 4.98837 5.04090 5.05950 5.10635 5.14157 5.25664 5.30015 5.36581 5.44236 5.46987 5.59692 5.67377 5.80351 6.12519 6.36533 6.40920 6.85054 7.36877 8.91710 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054979 B = 0.006281 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.161105 B = 4457.097422 C = 4582.909526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.159 4.159 7 C 0.079 3.921 8 H 0.072 0.928 9 N -0.546 5.546 10 C 0.028 3.972 11 C 0.082 3.918 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.019 0.981 35 H -0.006 1.006 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -5.362 -16.356 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.198 4.198 7 C -0.030 4.030 8 H 0.090 0.910 9 N -0.269 5.269 10 C -0.120 4.120 11 C -0.046 4.046 12 C -0.001 4.001 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.012 0.988 36 H 0.008 0.992 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.176 -4.928 -16.130 17.006 hybrid contribution 1.003 -0.552 1.144 1.618 sum -1.174 -5.479 -14.986 16.000 Atomic orbital electron populations 1.21709 0.94289 1.01791 1.01535 1.22072 0.96239 0.99320 0.93211 0.90772 1.22544 0.95444 1.00031 0.96859 1.22275 0.97713 1.01371 0.93985 1.22819 0.98579 1.00539 0.97906 1.22594 0.96159 0.92988 0.91240 0.90974 1.62206 1.39689 1.20824 1.04160 1.22367 0.92344 0.96458 1.00788 1.21925 0.97375 0.95727 0.89528 1.18917 0.94826 0.94211 0.92139 1.21632 1.47350 0.94338 0.95110 0.92338 1.25973 0.95161 0.95725 1.02794 1.70111 1.50540 1.08403 1.28152 0.85419 0.78613 0.78758 0.78077 1.19678 1.20595 1.18743 0.92401 0.94035 0.91360 0.90090 0.90578 0.90559 0.91881 0.91676 0.93121 0.89725 0.93609 0.95534 0.92551 0.96264 0.98779 0.99158 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.12 71.98 0.66 -2.34 16 2 C -0.09 -2.14 2.93 -9.72 -0.03 -2.17 16 3 H 0.07 1.89 5.85 -2.39 -0.01 1.88 16 4 C -0.11 -2.04 6.33 31.89 0.20 -1.84 16 5 C -0.12 -2.34 6.83 31.67 0.22 -2.12 16 6 C -0.16 -4.21 5.52 31.32 0.17 -4.04 16 7 C 0.08 2.33 2.54 45.64 0.12 2.45 16 8 H 0.07 2.22 7.66 -2.39 -0.02 2.20 16 9 N -0.55 -20.58 4.76 -892.77 -4.25 -24.82 16 10 C 0.03 0.99 8.55 127.69 1.09 2.08 16 11 C 0.08 3.66 4.53 86.30 0.39 4.05 16 12 C 0.04 2.03 4.90 29.85 0.15 2.18 16 13 C -0.55 -32.15 9.11 25.60 0.23 -31.91 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 17 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 22 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 26 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.54 5.14 -2.39 -0.01 1.53 16 30 H 0.08 2.47 5.92 -2.38 -0.01 2.46 16 31 H 0.05 1.84 6.60 -2.39 -0.02 1.83 16 32 H 0.03 0.90 6.23 -2.39 -0.01 0.88 16 33 H 0.06 2.49 7.97 -2.39 -0.02 2.47 16 34 H 0.02 0.85 7.18 -2.39 -0.02 0.83 16 35 H -0.01 -0.36 6.61 -2.39 -0.02 -0.38 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 37 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -64.91 283.10 2.74 -62.18 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.01 Total: 6.51 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.66 Total: -33.12 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.96 Total: -82.69 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.91 2.74 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.439 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds