Wall clock time and date at job start Mon Mar 30 2020 02:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.02185 * 2 1 4 4 C 1.54264 * 110.07223 * 238.57614 * 2 1 3 5 5 C 1.54889 * 104.19541 * 217.08363 * 4 2 1 6 6 C 1.54885 * 102.74764 * 37.94682 * 5 4 2 7 7 C 1.53878 * 110.03217 * 121.38932 * 2 1 3 8 8 H 1.09000 * 110.03382 * 238.62125 * 7 2 1 9 9 N 1.46902 * 110.03124 * 0.05011 * 7 2 1 10 10 C 1.46897 * 110.99957 * 204.19436 * 9 7 2 11 11 C 1.46901 * 111.00101 * 80.23780 * 9 7 2 12 12 C 1.53007 * 109.46752 * 198.06701 * 11 9 7 13 13 C 1.50703 * 109.46524 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99894 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99832 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00108 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47225 * 90.00212 * 17 15 13 19 19 H 1.48499 * 109.47090 * 210.00120 * 17 15 13 20 20 H 1.48495 * 109.47369 * 329.99827 * 17 15 13 21 21 H 1.09000 * 109.47163 * 302.01077 * 1 2 3 22 22 H 1.09007 * 109.47146 * 62.00986 * 1 2 3 23 23 H 1.08997 * 109.47344 * 182.01032 * 1 2 3 24 24 H 1.08995 * 110.49331 * 335.76956 * 4 2 1 25 25 H 1.09008 * 110.48227 * 98.27677 * 4 2 1 26 26 H 1.09005 * 110.75524 * 156.26411 * 5 4 2 27 27 H 1.08995 * 110.75807 * 279.62617 * 5 4 2 28 28 H 1.09002 * 110.48367 * 203.37225 * 6 5 4 29 29 H 1.09001 * 110.48672 * 80.73897 * 6 5 4 30 30 H 1.09007 * 109.47012 * 54.88117 * 10 9 7 31 31 H 1.09005 * 109.47012 * 174.87598 * 10 9 7 32 32 H 1.08997 * 109.47175 * 294.88027 * 10 9 7 33 33 H 1.08996 * 109.46957 * 318.06926 * 11 9 7 34 34 H 1.08997 * 109.46689 * 78.07563 * 11 9 7 35 35 H 1.08994 * 109.47074 * 299.99712 * 12 11 9 36 36 H 1.08990 * 109.47063 * 60.00604 * 12 11 9 37 37 H 0.96998 * 120.00431 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0594 -0.7554 -1.2364 5 6 3.3149 -1.4997 -0.7180 6 6 2.8883 -1.9396 0.7045 7 6 2.0571 -0.7530 1.2341 8 1 2.6859 -0.0943 1.8330 9 7 0.9328 -1.2465 2.0406 10 6 1.3346 -1.4420 3.4400 11 6 0.3813 -2.4843 1.4734 12 6 -1.0207 -2.7234 2.0377 13 6 -1.5861 -3.9936 1.4562 14 1 -1.0040 -4.5721 0.7542 15 6 -2.8471 -4.4166 1.8198 16 7 -3.5561 -3.7119 2.6743 17 14 -3.5483 -5.9906 1.0985 18 1 -3.1835 -7.1385 1.9670 19 1 -5.0270 -5.8818 1.0171 20 1 -2.9919 -6.2026 -0.2618 21 1 -0.3633 0.5447 0.8714 22 1 -0.3634 0.4823 -0.9075 23 1 -0.3634 -1.0270 0.0360 24 1 1.3159 -1.4664 -1.5965 25 1 2.3284 -0.0536 -2.0260 26 1 3.5347 -2.3668 -1.3409 27 1 4.1717 -0.8275 -0.6738 28 1 3.7645 -2.1021 1.3323 29 1 2.2787 -2.8420 0.6580 30 1 1.7583 -0.5161 3.8290 31 1 0.4631 -1.7199 4.0328 32 1 2.0804 -2.2348 3.4965 33 1 0.3258 -2.3936 0.3886 34 1 1.0263 -3.3229 1.7355 35 1 -0.9651 -2.8141 3.1224 36 1 -1.6657 -1.8849 1.7757 37 1 -4.4430 -4.0096 2.9304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690941987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:16 Heat of formation + Delta-G solvation = -5.622849 kcal Electronic energy + Delta-G solvation = -14920.016035 eV Core-core repulsion = 12696.885196 eV Total energy + Delta-G solvation = -2223.130840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.40985 -35.04507 -32.88025 -30.86869 -29.76875 -27.55269 -25.47892 -24.63193 -22.85749 -21.21681 -19.58459 -18.33716 -16.35427 -15.98870 -15.02778 -14.51968 -14.16335 -13.84089 -13.54166 -13.16829 -12.46215 -12.13411 -12.05229 -11.77211 -11.32221 -11.20572 -10.98091 -10.85693 -10.81234 -10.56343 -10.38665 -10.30678 -10.16679 -10.03355 -9.58249 -9.22141 -9.05192 -8.29451 -7.54665 -5.96166 -3.98321 3.33482 3.39861 3.42964 4.42761 4.60641 4.83678 4.91425 5.18794 5.39668 5.59009 5.62524 5.70279 5.78310 5.85038 5.88373 5.97936 6.04492 6.06137 6.17383 6.19881 6.32913 6.44243 6.47714 6.51388 6.55771 6.65015 6.79935 7.05968 7.20231 7.60360 7.68445 7.86373 7.98697 8.15229 8.48252 9.09523 9.65101 11.15117 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036729 B = 0.008137 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.167541 B = 3440.277652 C = 3633.990250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.062 0.938 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.166 4.166 7 C 0.082 3.918 8 H 0.069 0.931 9 N -0.531 5.531 10 C 0.028 3.972 11 C 0.058 3.942 12 C 0.029 3.971 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.060 0.940 22 H 0.032 0.968 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.016 0.984 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.014 0.986 36 H 0.025 0.975 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 5.786 -4.159 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.160 4.160 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.028 4.028 8 H 0.087 0.913 9 N -0.253 5.253 10 C -0.121 4.121 11 C -0.068 4.068 12 C -0.008 4.008 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.043 0.957 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.988 6.156 -4.059 13.233 hybrid contribution 0.260 -1.498 -0.247 1.540 sum 11.249 4.659 -4.305 12.914 Atomic orbital electron populations 1.21892 0.93561 1.04278 0.99926 1.21711 0.97447 0.97867 0.93300 0.91932 1.22488 0.97213 0.99001 0.97317 1.22382 0.97559 0.99491 0.96369 1.23225 1.00020 1.00828 0.96428 1.22379 0.90751 0.95153 0.94493 0.91283 1.62330 1.29165 1.32341 1.01480 1.22363 1.00031 0.99031 0.90659 1.22537 0.98084 0.87141 0.99021 1.19082 0.89275 0.96373 0.96086 1.21209 1.00614 1.08078 1.26077 0.92943 1.24982 0.97066 0.97004 0.95221 1.69972 1.11415 1.38546 1.33256 0.86635 0.78230 0.83830 0.79543 1.20780 1.21225 1.19914 0.92072 0.94915 0.90134 0.91331 0.92298 0.92086 0.92124 0.92587 0.89648 0.92786 0.90796 0.96562 0.91279 0.96070 0.96738 0.95676 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.99 37.16 0.30 -2.04 16 2 C -0.08 -1.23 3.30 -89.50 -0.30 -1.52 16 3 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.62 6.30 -25.07 -0.16 -1.78 16 5 C -0.12 -1.50 6.91 -24.74 -0.17 -1.67 16 6 C -0.17 -2.40 6.01 -25.08 -0.15 -2.55 16 7 C 0.08 1.25 2.91 -66.59 -0.19 1.05 16 8 H 0.07 0.99 7.74 -51.93 -0.40 0.58 16 9 N -0.53 -9.65 3.36 -233.54 -0.78 -10.43 16 10 C 0.03 0.47 9.27 60.06 0.56 1.02 16 11 C 0.06 1.22 2.25 -3.82 -0.01 1.22 16 12 C 0.03 0.76 4.94 -27.88 -0.14 0.62 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H 0.06 1.08 7.95 -51.93 -0.41 0.67 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 1.56 4.35 -51.93 -0.23 1.34 16 24 H 0.07 0.99 7.86 -51.93 -0.41 0.58 16 25 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.41 4.96 -51.93 -0.26 1.15 16 30 H 0.05 0.79 7.94 -51.93 -0.41 0.37 16 31 H 0.07 1.37 6.85 -51.93 -0.36 1.02 16 32 H 0.02 0.26 8.07 -51.93 -0.42 -0.16 16 33 H 0.07 1.44 5.34 -51.93 -0.28 1.17 16 34 H 0.02 0.45 6.76 -51.93 -0.35 0.10 16 35 H 0.01 0.40 6.88 -51.93 -0.36 0.04 16 36 H 0.02 0.70 8.00 -51.93 -0.42 0.29 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 279.55 15.07 4.21 4.21 Total: -1.00 -29.18 279.55 -7.90 -37.09 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.37 Total: -2.23 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.67 Total: -19.13 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.05 Total: -36.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.18 -7.90 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.464 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds