Wall clock time and date at job start Mon Mar 30 2020 02:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.02185 * 2 1 4 4 C 1.54264 * 110.07223 * 238.57614 * 2 1 3 5 5 C 1.54889 * 104.19541 * 217.08363 * 4 2 1 6 6 C 1.54885 * 102.74764 * 37.94682 * 5 4 2 7 7 C 1.53878 * 110.03217 * 121.38932 * 2 1 3 8 8 H 1.09000 * 110.03382 * 238.62125 * 7 2 1 9 9 N 1.46902 * 110.03124 * 0.05011 * 7 2 1 10 10 C 1.46897 * 110.99957 * 204.19436 * 9 7 2 11 11 C 1.46901 * 111.00101 * 80.23780 * 9 7 2 12 12 C 1.53007 * 109.46752 * 198.06701 * 11 9 7 13 13 C 1.50703 * 109.46524 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00332 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99894 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99832 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00108 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47225 * 90.00212 * 17 15 13 19 19 H 1.48499 * 109.47090 * 210.00120 * 17 15 13 20 20 H 1.48495 * 109.47369 * 329.99827 * 17 15 13 21 21 H 1.09000 * 109.47163 * 302.01077 * 1 2 3 22 22 H 1.09007 * 109.47146 * 62.00986 * 1 2 3 23 23 H 1.08997 * 109.47344 * 182.01032 * 1 2 3 24 24 H 1.08995 * 110.49331 * 335.76956 * 4 2 1 25 25 H 1.09008 * 110.48227 * 98.27677 * 4 2 1 26 26 H 1.09005 * 110.75524 * 156.26411 * 5 4 2 27 27 H 1.08995 * 110.75807 * 279.62617 * 5 4 2 28 28 H 1.09002 * 110.48367 * 203.37225 * 6 5 4 29 29 H 1.09001 * 110.48672 * 80.73897 * 6 5 4 30 30 H 1.09007 * 109.47012 * 54.88117 * 10 9 7 31 31 H 1.09005 * 109.47012 * 174.87598 * 10 9 7 32 32 H 1.08997 * 109.47175 * 294.88027 * 10 9 7 33 33 H 1.08996 * 109.46957 * 318.06926 * 11 9 7 34 34 H 1.08997 * 109.46689 * 78.07563 * 11 9 7 35 35 H 1.08994 * 109.47074 * 299.99712 * 12 11 9 36 36 H 1.08990 * 109.47063 * 60.00604 * 12 11 9 37 37 H 0.96998 * 120.00431 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0594 -0.7554 -1.2364 5 6 3.3149 -1.4997 -0.7180 6 6 2.8883 -1.9396 0.7045 7 6 2.0571 -0.7530 1.2341 8 1 2.6859 -0.0943 1.8330 9 7 0.9328 -1.2465 2.0406 10 6 1.3346 -1.4420 3.4400 11 6 0.3813 -2.4843 1.4734 12 6 -1.0207 -2.7234 2.0377 13 6 -1.5861 -3.9936 1.4562 14 1 -1.0040 -4.5721 0.7542 15 6 -2.8471 -4.4166 1.8198 16 7 -3.5561 -3.7119 2.6743 17 14 -3.5483 -5.9906 1.0985 18 1 -3.1835 -7.1385 1.9670 19 1 -5.0270 -5.8818 1.0171 20 1 -2.9919 -6.2026 -0.2618 21 1 -0.3633 0.5447 0.8714 22 1 -0.3634 0.4823 -0.9075 23 1 -0.3634 -1.0270 0.0360 24 1 1.3159 -1.4664 -1.5965 25 1 2.3284 -0.0536 -2.0260 26 1 3.5347 -2.3668 -1.3409 27 1 4.1717 -0.8275 -0.6738 28 1 3.7645 -2.1021 1.3323 29 1 2.2787 -2.8420 0.6580 30 1 1.7583 -0.5161 3.8290 31 1 0.4631 -1.7199 4.0328 32 1 2.0804 -2.2348 3.4965 33 1 0.3258 -2.3936 0.3886 34 1 1.0263 -3.3229 1.7355 35 1 -0.9651 -2.8141 3.1224 36 1 -1.6657 -1.8849 1.7757 37 1 -4.4430 -4.0096 2.9304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690941987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:16 Heat of formation + Delta-G solvation = -22.351695 kcal Electronic energy + Delta-G solvation = -14920.741453 eV Core-core repulsion = 12696.885196 eV Total energy + Delta-G solvation = -2223.856257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70348 -36.51772 -34.93413 -32.12620 -31.64684 -28.76521 -27.36098 -25.89911 -24.58011 -22.70040 -20.91690 -19.70044 -18.47654 -17.24639 -16.61849 -16.29098 -15.67058 -15.23073 -14.92901 -14.39396 -14.08847 -13.99100 -13.50246 -13.22541 -13.06300 -12.88739 -12.54437 -12.44694 -12.27833 -11.85460 -11.84151 -11.60820 -11.52585 -11.40932 -11.26887 -11.07779 -10.90126 -10.51667 -9.00170 -8.18641 -6.29626 1.39212 1.40709 1.51768 2.40473 3.14487 3.16852 3.73225 3.80787 4.05938 4.31145 4.41243 4.49978 4.55503 4.58374 4.63456 4.73546 4.80186 4.80769 4.89798 4.99564 5.04972 5.10390 5.13592 5.23021 5.27575 5.35443 5.45494 5.48506 5.54296 5.71686 5.75540 5.88064 6.16238 6.40032 6.46431 6.88342 7.39178 8.93418 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036729 B = 0.008137 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.167541 B = 3440.277652 C = 3633.990250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.165 4.165 7 C 0.078 3.922 8 H 0.089 0.911 9 N -0.543 5.543 10 C 0.030 3.970 11 C 0.084 3.916 12 C 0.039 3.961 13 C -0.542 4.542 14 H 0.057 0.943 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.963 3.037 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.263 1.263 21 H 0.043 0.957 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.017 0.983 35 H -0.013 1.013 36 H -0.007 1.007 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.270 5.822 -5.375 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.150 4.150 6 C -0.204 4.204 7 C -0.030 4.030 8 H 0.107 0.893 9 N -0.266 5.266 10 C -0.118 4.118 11 C -0.043 4.043 12 C 0.002 3.998 13 C -0.581 4.581 14 H 0.075 0.925 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.787 3.213 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.187 1.187 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.005 0.995 36 H 0.011 0.989 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.735 6.198 -5.280 15.115 hybrid contribution -0.280 -1.441 0.166 1.477 sum 12.454 4.757 -5.114 14.279 Atomic orbital electron populations 1.21780 0.95668 1.01901 0.99779 1.21756 0.95488 0.99256 0.93708 0.89725 1.22471 0.97119 0.99020 0.97257 1.22371 0.97757 1.00077 0.94762 1.23167 0.99881 0.99164 0.98212 1.22544 0.89982 0.95840 0.94660 0.89319 1.62207 1.31359 1.30617 1.02414 1.22347 0.99077 1.00730 0.89695 1.22081 0.95048 0.88509 0.98642 1.18896 0.91936 0.94607 0.94378 1.21626 1.01214 1.08942 1.26276 0.92468 1.25941 0.97463 1.00734 0.95490 1.70113 1.11875 1.40557 1.34579 0.85480 0.77420 0.79197 0.79163 1.19822 1.20689 1.18701 0.93767 0.93617 0.93396 0.93211 0.90023 0.91422 0.89824 0.91268 0.92248 0.89920 0.93560 0.95827 0.91251 0.96523 0.99489 0.98868 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 7.99 71.98 0.58 -3.90 16 2 C -0.08 -2.24 3.30 -10.07 -0.03 -2.28 16 3 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.12 -2.90 6.30 31.67 0.20 -2.70 16 5 C -0.11 -2.43 6.91 31.88 0.22 -2.21 16 6 C -0.17 -4.41 6.01 31.67 0.19 -4.22 16 7 C 0.08 2.24 2.91 45.64 0.13 2.37 16 8 H 0.09 2.23 7.74 -2.39 -0.02 2.21 16 9 N -0.54 -19.77 3.36 -892.77 -3.00 -22.77 16 10 C 0.03 1.00 9.27 127.69 1.18 2.18 16 11 C 0.08 3.63 2.25 86.31 0.19 3.83 16 12 C 0.04 2.15 4.94 29.85 0.15 2.30 16 13 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.09 5.46 84.66 0.46 0.56 16 16 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 17 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 H 0.04 1.58 7.95 -2.39 -0.02 1.56 16 22 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.05 1.91 4.35 -2.39 -0.01 1.90 16 24 H 0.05 1.37 7.86 -2.39 -0.02 1.36 16 25 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.90 4.96 -2.39 -0.01 1.89 16 30 H 0.08 2.27 7.94 -2.38 -0.02 2.26 16 31 H 0.05 1.78 6.85 -2.38 -0.02 1.77 16 32 H 0.02 0.74 8.07 -2.39 -0.02 0.73 16 33 H 0.07 2.98 5.34 -2.39 -0.01 2.97 16 34 H 0.02 0.73 6.76 -2.39 -0.02 0.71 16 35 H -0.01 -0.79 6.88 -2.39 -0.02 -0.80 16 36 H -0.01 -0.43 8.00 -2.39 -0.02 -0.45 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -64.14 279.55 3.83 -60.32 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.01 Total: 8.41 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.50 Total: -35.39 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -2.72 Total: -80.35 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.14 3.83 -60.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.964 kcal (2) G-P(sol) polarization free energy of solvation -64.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds