Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.05928 * 2 1 4 4 C 1.53873 * 110.03536 * 121.41809 * 2 1 3 5 5 C 1.54265 * 106.59997 * 119.28129 * 4 2 1 6 6 C 1.54888 * 104.19721 * 23.61451 * 5 4 2 7 7 C 1.54268 * 110.03371 * 238.58553 * 2 1 3 8 8 H 1.09002 * 110.48435 * 335.78433 * 7 2 1 9 9 N 1.46897 * 110.48570 * 98.29399 * 7 2 1 10 10 C 1.46894 * 111.00334 * 302.11391 * 9 7 2 11 11 C 1.46902 * 110.99978 * 178.15857 * 9 7 2 12 12 C 1.53002 * 109.47226 * 189.99961 * 11 9 7 13 13 C 1.50701 * 109.47355 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99665 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00243 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00073 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47232 * 90.00076 * 17 15 13 19 19 H 1.48501 * 109.46876 * 210.00289 * 17 15 13 20 20 H 1.48503 * 109.46855 * 329.99537 * 17 15 13 21 21 H 1.08997 * 109.47185 * 181.41435 * 1 2 3 22 22 H 1.08997 * 109.47310 * 301.41760 * 1 2 3 23 23 H 1.09001 * 109.47128 * 61.41643 * 1 2 3 24 24 H 1.08993 * 110.03875 * 238.57445 * 4 2 1 25 25 H 1.09006 * 110.02999 * 359.94984 * 4 2 1 26 26 H 1.09007 * 110.48635 * 142.29223 * 5 4 2 27 27 H 1.08996 * 110.49299 * 264.93519 * 5 4 2 28 28 H 1.08992 * 110.76047 * 203.74196 * 6 5 4 29 29 H 1.09000 * 110.75534 * 80.36765 * 6 5 4 30 30 H 1.09001 * 109.47142 * 59.99988 * 10 9 7 31 31 H 1.09004 * 109.47630 * 179.97438 * 10 9 7 32 32 H 1.08999 * 109.47683 * 300.00282 * 10 9 7 33 33 H 1.08999 * 109.47115 * 310.00138 * 11 9 7 34 34 H 1.09007 * 109.46758 * 70.00586 * 11 9 7 35 35 H 1.08999 * 109.47218 * 300.00114 * 12 11 9 36 36 H 1.08995 * 109.47089 * 60.00365 * 12 11 9 37 37 H 0.96998 * 120.00415 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7536 1.2337 5 6 2.8874 -1.9407 0.7034 6 6 3.3137 -1.5008 -0.7192 7 6 2.0584 -0.7554 -1.2369 8 1 1.3142 -1.4659 -1.5967 9 7 2.4210 0.1904 -2.3008 10 6 1.2718 1.0235 -2.6788 11 6 2.9668 -0.5146 -3.4683 12 6 3.5599 0.5016 -4.4464 13 6 4.1192 -0.2215 -5.6444 14 1 4.0575 -1.2982 -5.7026 15 6 4.7097 0.4913 -6.6662 16 7 4.7854 1.8024 -6.5951 17 14 5.4024 -0.4050 -8.1516 18 1 4.3465 -0.5362 -9.1874 19 1 6.5459 0.3641 -8.7049 20 1 5.8658 -1.7555 -7.7430 21 1 -0.3633 -1.0273 0.0254 22 1 -0.3634 0.5357 0.8770 23 1 -0.3633 0.4917 -0.9024 24 1 2.6866 -0.0955 1.8325 25 1 1.2229 -1.1185 1.8329 26 1 3.7637 -2.1038 1.3309 27 1 2.2772 -2.8426 0.6570 28 1 3.5325 -2.3678 -1.3423 29 1 4.1710 -0.8291 -0.6752 30 1 0.9310 1.5879 -1.8107 31 1 1.5680 1.7149 -3.4677 32 1 0.4636 0.3865 -3.0380 33 1 3.7459 -1.2047 -3.1446 34 1 2.1701 -1.0714 -3.9617 35 1 2.7808 1.1917 -4.7702 36 1 4.3565 1.0584 -3.9532 37 1 5.2005 2.3040 -7.3141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690941989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = -22.676721 kcal Electronic energy + Delta-G solvation = -14496.816494 eV Core-core repulsion = 12272.946143 eV Total energy + Delta-G solvation = -2223.870351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.05243 -35.47048 -32.85865 -31.35713 -29.51945 -27.64233 -25.52764 -24.90329 -22.81419 -20.63198 -19.49821 -19.16967 -16.61352 -15.78779 -14.97470 -14.44037 -14.38035 -13.85074 -13.36480 -13.20592 -12.75347 -12.65494 -12.15318 -12.06623 -11.57199 -11.16363 -11.00983 -10.90939 -10.76836 -10.59031 -10.54071 -10.45850 -10.35610 -10.16451 -9.72313 -9.26528 -9.07013 -8.29454 -7.62621 -5.96291 -3.98432 3.33898 3.39979 3.43443 4.41452 4.57696 4.72200 4.80268 5.06669 5.39289 5.39608 5.47500 5.56871 5.67855 5.71367 5.76421 5.88522 5.94681 5.97957 6.03285 6.10562 6.18254 6.25659 6.33522 6.40188 6.44647 6.53797 6.61580 6.67100 7.05200 7.59818 7.67330 7.87605 7.96778 8.13922 8.48282 9.09064 9.64941 11.15162 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052406 B = 0.006408 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.159451 B = 4368.626329 C = 4672.036875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.082 0.918 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.116 4.116 7 C 0.083 3.917 8 H 0.037 0.963 9 N -0.535 5.535 10 C 0.024 3.976 11 C 0.062 3.938 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.024 0.976 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 -4.619 13.393 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.026 4.026 8 H 0.055 0.945 9 N -0.259 5.259 10 C -0.124 4.124 11 C -0.065 4.065 12 C -0.010 4.010 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.277 -4.153 13.476 15.435 hybrid contribution -0.279 -0.960 -1.267 1.614 sum -6.556 -5.113 12.209 14.772 Atomic orbital electron populations 1.22021 0.95603 1.01358 1.01637 1.21785 0.94884 1.00455 0.93996 0.89980 1.22163 0.99108 0.97061 0.97137 1.22311 0.99292 0.97715 0.96793 1.22527 0.98277 0.99597 0.94968 1.22532 0.95600 0.92814 0.91686 0.94468 1.62205 1.30438 1.22957 1.10299 1.22457 0.91604 0.97560 1.00821 1.22345 0.97188 0.97369 0.89582 1.19096 0.96042 0.93779 0.92040 1.21210 1.37820 0.93281 1.03650 0.92877 1.24990 0.96138 0.94817 0.98375 1.69974 1.44715 1.05599 1.33029 0.86608 0.78678 0.79751 0.83036 1.20738 1.21205 1.19903 0.93087 0.93009 0.92316 0.91985 0.92205 0.91859 0.92133 0.91886 0.90261 0.92202 0.90535 0.96686 0.91988 0.96565 0.96532 0.95767 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.56 37.15 0.32 -1.39 16 2 C -0.09 -1.21 2.39 -89.50 -0.21 -1.42 16 3 H 0.08 1.17 7.53 -51.93 -0.39 0.78 16 4 C -0.12 -1.32 6.46 -25.61 -0.17 -1.48 16 5 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 6 C -0.12 -1.68 5.40 -24.74 -0.13 -1.82 16 7 C 0.08 1.29 2.14 -66.05 -0.14 1.14 16 8 H 0.04 0.60 7.85 -51.93 -0.41 0.19 16 9 N -0.54 -10.09 4.59 -232.89 -1.07 -11.16 16 10 C 0.02 0.42 8.12 60.06 0.49 0.90 16 11 C 0.06 1.36 4.78 -3.82 -0.02 1.34 16 12 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.70 6.00 -51.93 -0.31 0.39 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 26 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.91 5.71 -51.93 -0.30 0.61 16 31 H 0.08 1.49 6.30 -51.93 -0.33 1.17 16 32 H 0.01 0.25 8.07 -51.93 -0.42 -0.17 16 33 H 0.06 1.34 6.69 -51.93 -0.35 0.99 16 34 H 0.02 0.36 8.12 -51.92 -0.42 -0.06 16 35 H 0.02 0.46 6.47 -51.93 -0.34 0.13 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 284.07 15.07 4.28 4.28 Total: -1.00 -29.93 284.07 -8.22 -38.14 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.56 Total: -4.15 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.59 Total: -17.48 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.33 Total: -37.70 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.93 -8.22 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.468 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds