Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.05928 * 2 1 4 4 C 1.53873 * 110.03536 * 121.41809 * 2 1 3 5 5 C 1.54265 * 106.59997 * 119.28129 * 4 2 1 6 6 C 1.54888 * 104.19721 * 23.61451 * 5 4 2 7 7 C 1.54268 * 110.03371 * 238.58553 * 2 1 3 8 8 H 1.09002 * 110.48435 * 335.78433 * 7 2 1 9 9 N 1.46897 * 110.48570 * 98.29399 * 7 2 1 10 10 C 1.46894 * 111.00334 * 302.11391 * 9 7 2 11 11 C 1.46902 * 110.99978 * 178.15857 * 9 7 2 12 12 C 1.53002 * 109.47226 * 189.99961 * 11 9 7 13 13 C 1.50701 * 109.47355 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99665 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00243 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00073 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47232 * 90.00076 * 17 15 13 19 19 H 1.48501 * 109.46876 * 210.00289 * 17 15 13 20 20 H 1.48503 * 109.46855 * 329.99537 * 17 15 13 21 21 H 1.08997 * 109.47185 * 181.41435 * 1 2 3 22 22 H 1.08997 * 109.47310 * 301.41760 * 1 2 3 23 23 H 1.09001 * 109.47128 * 61.41643 * 1 2 3 24 24 H 1.08993 * 110.03875 * 238.57445 * 4 2 1 25 25 H 1.09006 * 110.02999 * 359.94984 * 4 2 1 26 26 H 1.09007 * 110.48635 * 142.29223 * 5 4 2 27 27 H 1.08996 * 110.49299 * 264.93519 * 5 4 2 28 28 H 1.08992 * 110.76047 * 203.74196 * 6 5 4 29 29 H 1.09000 * 110.75534 * 80.36765 * 6 5 4 30 30 H 1.09001 * 109.47142 * 59.99988 * 10 9 7 31 31 H 1.09004 * 109.47630 * 179.97438 * 10 9 7 32 32 H 1.08999 * 109.47683 * 300.00282 * 10 9 7 33 33 H 1.08999 * 109.47115 * 310.00138 * 11 9 7 34 34 H 1.09007 * 109.46758 * 70.00586 * 11 9 7 35 35 H 1.08999 * 109.47218 * 300.00114 * 12 11 9 36 36 H 1.08995 * 109.47089 * 60.00365 * 12 11 9 37 37 H 0.96998 * 120.00415 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7536 1.2337 5 6 2.8874 -1.9407 0.7034 6 6 3.3137 -1.5008 -0.7192 7 6 2.0584 -0.7554 -1.2369 8 1 1.3142 -1.4659 -1.5967 9 7 2.4210 0.1904 -2.3008 10 6 1.2718 1.0235 -2.6788 11 6 2.9668 -0.5146 -3.4683 12 6 3.5599 0.5016 -4.4464 13 6 4.1192 -0.2215 -5.6444 14 1 4.0575 -1.2982 -5.7026 15 6 4.7097 0.4913 -6.6662 16 7 4.7854 1.8024 -6.5951 17 14 5.4024 -0.4050 -8.1516 18 1 4.3465 -0.5362 -9.1874 19 1 6.5459 0.3641 -8.7049 20 1 5.8658 -1.7555 -7.7430 21 1 -0.3633 -1.0273 0.0254 22 1 -0.3634 0.5357 0.8770 23 1 -0.3633 0.4917 -0.9024 24 1 2.6866 -0.0955 1.8325 25 1 1.2229 -1.1185 1.8329 26 1 3.7637 -2.1038 1.3309 27 1 2.2772 -2.8426 0.6570 28 1 3.5325 -2.3678 -1.3423 29 1 4.1710 -0.8291 -0.6752 30 1 0.9310 1.5879 -1.8107 31 1 1.5680 1.7149 -3.4677 32 1 0.4636 0.3865 -3.0380 33 1 3.7459 -1.2047 -3.1446 34 1 2.1701 -1.0714 -3.9617 35 1 2.7808 1.1917 -4.7702 36 1 4.3565 1.0584 -3.9532 37 1 5.2005 2.3040 -7.3141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690941989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = -40.735976 kcal Electronic energy + Delta-G solvation = -14497.599602 eV Core-core repulsion = 12272.946143 eV Total energy + Delta-G solvation = -2224.653459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.28315 -36.96891 -34.95121 -32.46870 -31.39601 -28.85678 -27.22689 -26.20125 -24.46491 -22.11222 -20.98928 -20.26042 -18.63174 -17.27894 -16.56259 -16.00681 -15.83165 -15.33644 -14.66989 -14.50148 -14.27939 -13.99149 -13.78881 -13.27338 -13.11132 -12.90527 -12.74599 -12.50143 -12.19499 -11.93088 -11.90534 -11.67571 -11.49811 -11.46393 -11.25871 -11.23259 -11.01652 -10.54146 -9.15831 -8.20509 -6.32157 1.39300 1.41232 1.52413 2.39861 3.10819 3.12654 3.64976 3.77515 4.02741 4.29821 4.41079 4.45729 4.49834 4.53632 4.58648 4.67139 4.69089 4.78092 4.82881 4.96223 5.03499 5.07129 5.11352 5.14247 5.23774 5.30151 5.34658 5.41954 5.49683 5.58251 5.66469 5.79818 6.11017 6.34805 6.40980 6.84919 7.36922 8.91775 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052406 B = 0.006408 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.159451 B = 4368.626329 C = 4672.036875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.078 3.922 8 H 0.037 0.963 9 N -0.547 5.547 10 C 0.029 3.971 11 C 0.080 3.920 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.013 0.987 35 H -0.006 1.006 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 -6.019 14.318 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.030 4.030 8 H 0.055 0.945 9 N -0.271 5.271 10 C -0.119 4.119 11 C -0.047 4.047 12 C -0.001 4.001 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.012 0.988 36 H 0.009 0.991 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.848 -5.561 14.421 16.905 hybrid contribution -0.115 -0.481 -1.522 1.601 sum -6.963 -6.042 12.899 15.855 Atomic orbital electron populations 1.21992 0.94110 1.02080 1.02104 1.21767 0.96116 0.99518 0.93469 0.91363 1.22158 0.99803 0.96705 0.96345 1.22287 1.00097 0.98284 0.94625 1.22542 0.97234 0.98892 0.97157 1.22695 0.96255 0.92602 0.91461 0.94522 1.62140 1.31531 1.23763 1.09711 1.22413 0.91235 0.97178 1.01071 1.21959 0.97037 0.95893 0.89857 1.18921 0.94388 0.94113 0.92652 1.21625 1.38325 0.93767 1.04682 0.92344 1.25974 0.96264 0.95635 1.01782 1.70112 1.45418 1.07384 1.34288 0.85418 0.78045 0.78697 0.78700 1.19694 1.20587 1.18718 0.92307 0.91137 0.93209 0.91427 0.90119 0.90528 0.90897 0.92499 0.92099 0.89609 0.93417 0.95984 0.91863 0.96851 0.98768 0.99061 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.56 71.98 0.62 -2.33 16 2 C -0.09 -2.17 2.39 -10.07 -0.02 -2.20 16 3 H 0.07 1.85 7.53 -2.39 -0.02 1.83 16 4 C -0.11 -2.19 6.46 31.32 0.20 -1.99 16 5 C -0.12 -2.37 6.83 31.67 0.22 -2.15 16 6 C -0.12 -3.40 5.40 31.89 0.17 -3.23 16 7 C 0.08 2.36 2.14 45.99 0.10 2.46 16 8 H 0.04 1.13 7.85 -2.39 -0.02 1.11 16 9 N -0.55 -20.90 4.59 -890.72 -4.09 -24.99 16 10 C 0.03 1.03 8.12 127.69 1.04 2.06 16 11 C 0.08 3.59 4.78 86.30 0.41 4.01 16 12 C 0.04 2.04 4.90 29.85 0.15 2.19 16 13 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 17 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.09 6.00 -2.39 -0.01 1.08 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.28 7.67 -2.38 -0.02 1.26 16 26 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.64 7.72 -2.39 -0.02 1.62 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.55 5.71 -2.39 -0.01 2.54 16 31 H 0.05 1.94 6.30 -2.39 -0.02 1.93 16 32 H 0.02 0.73 8.07 -2.39 -0.02 0.71 16 33 H 0.06 2.79 6.69 -2.39 -0.02 2.77 16 34 H 0.01 0.60 8.12 -2.38 -0.02 0.58 16 35 H -0.01 -0.35 6.47 -2.39 -0.02 -0.37 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -65.06 284.07 2.80 -62.26 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.01 Total: 6.00 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.57 Total: -32.54 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.81 Total: -82.82 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.06 2.80 -62.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.527 kcal (2) G-P(sol) polarization free energy of solvation -65.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds