Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.05673 * 2 1 4 4 C 1.54264 * 110.03698 * 121.41889 * 2 1 3 5 5 C 1.54890 * 104.19445 * 142.89217 * 4 2 1 6 6 C 1.54884 * 102.75171 * 322.05791 * 5 4 2 7 7 C 1.53878 * 110.03184 * 238.58944 * 2 1 3 8 8 H 1.08994 * 110.07639 * 121.40615 * 7 2 1 9 9 N 1.46906 * 110.02890 * 359.97438 * 7 2 1 10 10 C 1.46904 * 110.99848 * 204.58265 * 9 7 2 11 11 C 1.46896 * 110.99748 * 80.63137 * 9 7 2 12 12 C 1.53000 * 109.46892 * 189.99791 * 11 9 7 13 13 C 1.50706 * 109.47336 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99796 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00223 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99915 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00019 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46933 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47222 * 120.00140 * 17 15 13 20 20 H 1.48501 * 109.47362 * 240.00079 * 17 15 13 21 21 H 1.08994 * 109.46947 * 172.07655 * 1 2 3 22 22 H 1.09004 * 109.46665 * 292.07320 * 1 2 3 23 23 H 1.08994 * 109.46897 * 52.06628 * 1 2 3 24 24 H 1.09003 * 110.48395 * 24.21741 * 4 2 1 25 25 H 1.08998 * 110.59898 * 261.62661 * 4 2 1 26 26 H 1.09008 * 110.75232 * 203.74377 * 5 4 2 27 27 H 1.09001 * 110.91368 * 80.45408 * 5 4 2 28 28 H 1.08997 * 110.48870 * 279.26589 * 6 5 4 29 29 H 1.08995 * 110.60062 * 156.67657 * 6 5 4 30 30 H 1.08994 * 109.47198 * 302.86231 * 10 9 7 31 31 H 1.09004 * 109.46935 * 62.86202 * 10 9 7 32 32 H 1.08999 * 109.47124 * 182.85751 * 10 9 7 33 33 H 1.08994 * 109.47523 * 309.99818 * 11 9 7 34 34 H 1.08996 * 109.47592 * 70.00118 * 11 9 7 35 35 H 1.09003 * 109.47455 * 299.99878 * 12 11 9 36 36 H 1.09002 * 109.47321 * 60.00162 * 12 11 9 37 37 H 0.96999 * 120.00113 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0586 -0.7555 1.2368 5 6 3.3138 -1.5007 0.7189 6 6 2.8875 -1.9406 -0.7037 7 6 2.0571 -0.7534 -1.2338 8 1 2.6865 -0.0957 -1.8332 9 7 0.9328 -1.2467 -2.0404 10 6 1.3328 -2.4077 -2.8468 11 6 0.3856 -0.1797 -2.8890 12 6 -0.9248 -0.6526 -3.5214 13 6 -1.4866 0.4423 -4.3915 14 1 -0.9611 1.3813 -4.4844 15 6 -2.6706 0.2448 -5.0696 16 7 -3.3102 -0.8988 -4.9569 17 14 -3.3664 1.6016 -6.1487 18 1 -2.4638 2.7801 -6.1058 19 1 -3.4785 1.1138 -7.5468 20 1 -4.7105 1.9899 -5.6507 21 1 -0.3633 -1.0178 -0.1417 22 1 -0.3633 0.3862 0.9524 23 1 -0.3633 0.6317 -0.8105 24 1 1.3144 -1.4661 1.5965 25 1 2.3295 -0.0553 2.0270 26 1 3.5326 -2.3679 1.3420 27 1 4.1731 -0.8316 0.6752 28 1 2.2772 -2.8425 -0.6573 29 1 3.7624 -2.1051 -1.3325 30 1 2.1779 -2.1368 -3.4795 31 1 1.6205 -3.2264 -2.1872 32 1 0.4967 -2.7214 -3.4718 33 1 0.1975 0.7063 -2.2827 34 1 1.1013 0.0628 -3.6745 35 1 -0.7368 -1.5386 -4.1278 36 1 -1.6406 -0.8951 -2.7359 37 1 -4.1434 -1.0376 -5.4337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690941991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = -8.817790 kcal Electronic energy + Delta-G solvation = -14706.584615 eV Core-core repulsion = 12483.315233 eV Total energy + Delta-G solvation = -2223.269383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.17117 -35.32488 -32.86360 -31.22259 -29.60305 -27.21702 -25.73752 -24.72880 -22.97682 -20.40029 -20.00328 -18.45930 -16.38070 -16.06139 -15.19424 -14.48790 -14.29726 -14.15120 -13.44825 -12.84921 -12.55448 -12.21195 -12.04880 -11.72909 -11.35788 -11.17672 -11.03318 -10.92072 -10.78490 -10.56934 -10.43708 -10.33894 -10.22933 -10.10399 -9.62341 -9.21960 -9.05135 -8.29957 -7.55282 -5.97025 -3.98985 3.32567 3.39987 3.44020 4.42507 4.60392 4.77274 4.80169 5.13849 5.38956 5.55685 5.59143 5.65037 5.74865 5.82159 5.89448 5.94605 5.99356 6.04062 6.12682 6.18269 6.30716 6.35873 6.42941 6.51892 6.56948 6.60901 6.78930 7.03352 7.16063 7.61435 7.67786 7.87623 7.96938 8.13890 8.47877 9.08827 9.64565 11.14408 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054123 B = 0.006838 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.218593 B = 4093.497663 C = 4305.778037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.060 0.940 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.124 4.124 7 C 0.080 3.920 8 H 0.036 0.964 9 N -0.530 5.530 10 C 0.021 3.979 11 C 0.056 3.944 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.073 0.927 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.014 0.986 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.025 0.975 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.091 -1.143 9.552 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.078 0.922 4 C -0.154 4.154 5 C -0.162 4.162 6 C -0.162 4.162 7 C -0.029 4.029 8 H 0.054 0.946 9 N -0.254 5.254 10 C -0.127 4.127 11 C -0.070 4.070 12 C -0.009 4.009 13 C -0.559 4.559 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.563 -1.380 9.798 14.474 hybrid contribution 0.229 1.012 -1.300 1.663 sum 10.792 -0.369 8.498 13.741 Atomic orbital electron populations 1.21857 0.93608 1.03930 1.00000 1.21722 0.97449 0.97744 0.93535 0.92159 1.22406 0.96974 0.98857 0.97118 1.22440 0.97723 0.99611 0.96383 1.22610 0.98788 0.98930 0.95831 1.22305 0.90970 0.95120 0.94498 0.94561 1.62289 1.29621 1.08220 1.25278 1.22463 0.99814 0.93874 0.96577 1.22535 0.98050 0.92995 0.93443 1.19098 0.90348 0.96267 0.95177 1.21249 1.06671 1.00508 1.27463 0.92860 1.24985 0.96941 0.95535 0.96849 1.69982 1.16785 1.23582 1.42940 0.86566 0.78992 0.82268 0.80344 1.19809 1.21073 1.20993 0.90772 0.94837 0.91571 0.91425 0.92385 0.91967 0.92025 0.90259 0.92380 0.96791 0.92129 0.90490 0.91337 0.96710 0.96562 0.95689 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.87 37.16 0.29 -1.94 16 2 C -0.09 -1.24 3.36 -89.50 -0.30 -1.54 16 3 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.12 -1.40 6.36 -25.07 -0.16 -1.56 16 5 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 6 C -0.12 -1.60 5.25 -25.07 -0.13 -1.73 16 7 C 0.08 1.24 2.81 -66.59 -0.19 1.05 16 8 H 0.04 0.59 7.97 -51.93 -0.41 0.17 16 9 N -0.53 -9.73 3.06 -233.54 -0.72 -10.44 16 10 C 0.02 0.36 8.67 60.07 0.52 0.88 16 11 C 0.06 1.21 4.03 -3.83 -0.02 1.19 16 12 C 0.03 0.74 4.91 -27.88 -0.14 0.61 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 21 H 0.07 1.32 7.36 -51.93 -0.38 0.94 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 1.22 5.33 -51.93 -0.28 0.94 16 24 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.06 6.26 -51.93 -0.33 0.74 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.90 5.97 -51.93 -0.31 0.59 16 32 H 0.08 1.49 6.19 -51.93 -0.32 1.16 16 33 H 0.07 1.46 5.40 -51.93 -0.28 1.18 16 34 H 0.01 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.02 0.45 6.42 -51.93 -0.33 0.12 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -29.45 279.99 -7.88 -37.33 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.40 Total: -3.38 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.70 Total: -18.19 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.02 Total: -36.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.45 -7.88 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.512 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds