Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.05673 * 2 1 4 4 C 1.54264 * 110.03698 * 121.41889 * 2 1 3 5 5 C 1.54890 * 104.19445 * 142.89217 * 4 2 1 6 6 C 1.54884 * 102.75171 * 322.05791 * 5 4 2 7 7 C 1.53878 * 110.03184 * 238.58944 * 2 1 3 8 8 H 1.08994 * 110.07639 * 121.40615 * 7 2 1 9 9 N 1.46906 * 110.02890 * 359.97438 * 7 2 1 10 10 C 1.46904 * 110.99848 * 204.58265 * 9 7 2 11 11 C 1.46896 * 110.99748 * 80.63137 * 9 7 2 12 12 C 1.53000 * 109.46892 * 189.99791 * 11 9 7 13 13 C 1.50706 * 109.47336 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99796 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00223 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99915 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00019 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46933 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47222 * 120.00140 * 17 15 13 20 20 H 1.48501 * 109.47362 * 240.00079 * 17 15 13 21 21 H 1.08994 * 109.46947 * 172.07655 * 1 2 3 22 22 H 1.09004 * 109.46665 * 292.07320 * 1 2 3 23 23 H 1.08994 * 109.46897 * 52.06628 * 1 2 3 24 24 H 1.09003 * 110.48395 * 24.21741 * 4 2 1 25 25 H 1.08998 * 110.59898 * 261.62661 * 4 2 1 26 26 H 1.09008 * 110.75232 * 203.74377 * 5 4 2 27 27 H 1.09001 * 110.91368 * 80.45408 * 5 4 2 28 28 H 1.08997 * 110.48870 * 279.26589 * 6 5 4 29 29 H 1.08995 * 110.60062 * 156.67657 * 6 5 4 30 30 H 1.08994 * 109.47198 * 302.86231 * 10 9 7 31 31 H 1.09004 * 109.46935 * 62.86202 * 10 9 7 32 32 H 1.08999 * 109.47124 * 182.85751 * 10 9 7 33 33 H 1.08994 * 109.47523 * 309.99818 * 11 9 7 34 34 H 1.08996 * 109.47592 * 70.00118 * 11 9 7 35 35 H 1.09003 * 109.47455 * 299.99878 * 12 11 9 36 36 H 1.09002 * 109.47321 * 60.00162 * 12 11 9 37 37 H 0.96999 * 120.00113 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0586 -0.7555 1.2368 5 6 3.3138 -1.5007 0.7189 6 6 2.8875 -1.9406 -0.7037 7 6 2.0571 -0.7534 -1.2338 8 1 2.6865 -0.0957 -1.8332 9 7 0.9328 -1.2467 -2.0404 10 6 1.3328 -2.4077 -2.8468 11 6 0.3856 -0.1797 -2.8890 12 6 -0.9248 -0.6526 -3.5214 13 6 -1.4866 0.4423 -4.3915 14 1 -0.9611 1.3813 -4.4844 15 6 -2.6706 0.2448 -5.0696 16 7 -3.3102 -0.8988 -4.9569 17 14 -3.3664 1.6016 -6.1487 18 1 -2.4638 2.7801 -6.1058 19 1 -3.4785 1.1138 -7.5468 20 1 -4.7105 1.9899 -5.6507 21 1 -0.3633 -1.0178 -0.1417 22 1 -0.3633 0.3862 0.9524 23 1 -0.3633 0.6317 -0.8105 24 1 1.3144 -1.4661 1.5965 25 1 2.3295 -0.0553 2.0270 26 1 3.5326 -2.3679 1.3420 27 1 4.1731 -0.8316 0.6752 28 1 2.2772 -2.8425 -0.6573 29 1 3.7624 -2.1051 -1.3325 30 1 2.1779 -2.1368 -3.4795 31 1 1.6205 -3.2264 -2.1872 32 1 0.4967 -2.7214 -3.4718 33 1 0.1975 0.7063 -2.2827 34 1 1.1013 0.0628 -3.6745 35 1 -0.7368 -1.5386 -4.1278 36 1 -1.6406 -0.8951 -2.7359 37 1 -4.1434 -1.0376 -5.4337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690941991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = -25.481695 kcal Electronic energy + Delta-G solvation = -14707.307216 eV Core-core repulsion = 12483.315233 eV Total energy + Delta-G solvation = -2223.991984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43450 -36.80307 -34.93052 -32.51098 -31.39835 -28.46404 -27.42898 -26.13241 -24.67724 -21.91984 -21.31333 -19.74890 -18.50326 -17.28662 -16.67086 -16.31825 -15.82466 -15.59809 -14.61826 -14.32683 -14.11848 -14.05597 -13.41348 -13.18098 -13.06773 -12.88390 -12.67613 -12.40820 -12.23515 -11.92069 -11.80981 -11.62224 -11.44882 -11.35975 -11.27652 -11.12240 -11.01833 -10.52907 -9.04436 -8.20278 -6.31354 1.39054 1.39555 1.52812 2.39808 3.12883 3.13911 3.70982 3.76143 4.08768 4.29876 4.41811 4.48803 4.54013 4.59214 4.65727 4.67471 4.79068 4.82367 4.87853 5.02561 5.07530 5.08337 5.11633 5.19598 5.29028 5.36325 5.43582 5.47617 5.56622 5.69987 5.72361 5.85610 6.13994 6.37958 6.43828 6.86194 7.37641 8.92072 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054123 B = 0.006838 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.218593 B = 4093.497663 C = 4305.778037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.074 3.926 8 H 0.032 0.968 9 N -0.538 5.538 10 C 0.024 3.976 11 C 0.075 3.925 12 C 0.039 3.961 13 C -0.544 4.544 14 H 0.056 0.944 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.008 0.992 35 H -0.007 1.007 36 H -0.006 1.006 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.494 -0.416 10.363 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.034 4.034 8 H 0.050 0.950 9 N -0.262 5.262 10 C -0.124 4.124 11 C -0.052 4.052 12 C 0.002 3.998 13 C -0.582 4.582 14 H 0.075 0.925 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.202 1.202 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.027 0.973 35 H 0.011 0.989 36 H 0.012 0.988 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.986 -0.656 10.621 16.028 hybrid contribution -0.215 0.748 -1.525 1.712 sum 11.771 0.092 9.097 14.876 Atomic orbital electron populations 1.21741 0.95350 1.01949 0.99708 1.21767 0.95832 0.98546 0.94462 0.91449 1.22375 0.97288 0.98966 0.96269 1.22427 0.97459 1.00414 0.94985 1.22592 0.98557 0.97338 0.97309 1.22477 0.90158 0.96524 0.94279 0.95025 1.62219 1.31649 1.07516 1.24795 1.22443 0.98759 0.94325 0.96862 1.22153 0.95685 0.93881 0.93499 1.18898 0.92018 0.95053 0.93835 1.21654 1.07316 1.01132 1.28102 0.92534 1.25943 0.97247 0.98140 0.98254 1.70114 1.17318 1.25769 1.43955 0.85400 0.78301 0.79105 0.78232 1.18700 1.20284 1.20234 0.92842 0.93166 0.94410 0.91860 0.90496 0.90110 0.90731 0.90778 0.91212 0.96050 0.89341 0.93459 0.91176 0.97335 0.98900 0.98809 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.87 71.98 0.57 -3.68 16 2 C -0.09 -2.39 3.36 -10.07 -0.03 -2.42 16 3 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 4 C -0.11 -2.37 6.36 31.67 0.20 -2.17 16 5 C -0.12 -2.14 6.91 31.88 0.22 -1.92 16 6 C -0.12 -2.79 5.25 31.67 0.17 -2.63 16 7 C 0.07 2.20 2.81 45.64 0.13 2.33 16 8 H 0.03 0.98 7.97 -2.39 -0.02 0.96 16 9 N -0.54 -19.93 3.06 -892.78 -2.74 -22.66 16 10 C 0.02 0.83 8.67 127.69 1.11 1.94 16 11 C 0.08 3.33 4.03 86.30 0.35 3.67 16 12 C 0.04 2.16 4.91 29.85 0.15 2.31 16 13 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 17 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H 0.05 1.94 7.36 -2.39 -0.02 1.92 16 22 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.04 1.42 5.33 -2.39 -0.01 1.41 16 24 H 0.06 1.41 7.85 -2.39 -0.02 1.39 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.81 6.26 -2.39 -0.01 1.79 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 2.54 5.97 -2.38 -0.01 2.52 16 32 H 0.05 1.90 6.19 -2.39 -0.01 1.89 16 33 H 0.07 3.07 5.40 -2.39 -0.01 3.06 16 34 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 35 H -0.01 -0.43 6.42 -2.39 -0.02 -0.44 16 36 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.36 279.99 4.13 -60.23 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.01 Total: 6.47 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 3.55 Total: -33.60 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.45 Total: -80.20 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.36 4.13 -60.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.745 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds