Wall clock time and date at job start Mon Mar 30 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46864 * 2 1 4 4 C 1.52998 * 109.47416 * 119.99870 * 2 1 3 5 5 C 1.50697 * 109.47175 * 184.56377 * 4 2 1 6 6 H 1.08002 * 120.00190 * 5.19112 * 5 4 2 7 7 C 1.37879 * 120.00337 * 185.18814 * 5 4 2 8 8 N 1.31523 * 119.99541 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00418 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47458 * 89.99993 * 9 7 5 11 11 H 1.48498 * 109.47171 * 209.99844 * 9 7 5 12 12 H 1.48500 * 109.47152 * 329.99643 * 9 7 5 13 13 N 1.46896 * 109.47437 * 240.00424 * 2 1 3 14 14 C 1.46905 * 110.99580 * 304.16200 * 13 2 1 15 15 C 1.46899 * 111.00172 * 68.11147 * 13 2 1 16 16 C 1.53001 * 109.46989 * 76.12370 * 15 13 2 17 17 C 1.52999 * 115.54891 * 40.30224 * 16 15 13 18 18 C 1.52998 * 117.50034 * 254.59792 * 16 15 13 19 19 C 1.53002 * 117.50053 * 185.97005 * 16 15 13 20 20 H 1.09007 * 109.47066 * 299.99710 * 1 2 3 21 21 H 1.08993 * 109.47622 * 60.00117 * 1 2 3 22 22 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47338 * 304.56670 * 4 2 1 24 24 H 1.09001 * 109.46940 * 64.56506 * 4 2 1 25 25 H 0.97002 * 119.99895 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.46841 * 59.60805 * 14 13 2 27 27 H 1.09004 * 109.47260 * 179.60467 * 14 13 2 28 28 H 1.08996 * 109.47254 * 299.60666 * 14 13 2 29 29 H 1.09004 * 109.47247 * 196.12130 * 15 13 2 30 30 H 1.09000 * 109.47593 * 316.12677 * 15 13 2 31 31 H 1.09002 * 109.47467 * 63.20847 * 17 16 15 32 32 H 1.09002 * 109.46978 * 183.21533 * 17 16 15 33 33 H 1.09007 * 109.47147 * 303.21032 * 17 16 15 34 34 H 1.09004 * 117.49912 * 359.97438 * 18 16 15 35 35 H 1.08998 * 117.50246 * 145.01873 * 18 16 15 36 36 H 1.09000 * 117.49988 * 214.97844 * 19 16 15 37 37 H 1.08994 * 117.49589 * 0.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5427 -0.6240 1.3070 6 1 4.0740 -0.0303 0.5778 7 6 4.2396 -1.2930 2.2908 8 7 3.5927 -2.0155 3.1792 9 14 6.1022 -1.1719 2.3629 10 1 6.4909 -0.0211 3.2171 11 1 6.6578 -2.4239 2.9365 12 1 6.6389 -0.9747 0.9924 13 7 2.0197 -0.6924 -1.1994 14 6 1.4691 -2.0517 -1.2842 15 6 1.7132 0.0764 -2.4131 16 6 2.6807 1.2561 -2.5274 17 6 4.1325 0.9581 -2.1477 18 6 2.1372 2.6493 -2.2041 19 6 2.4374 2.2627 -3.6538 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6115 -0.2568 2.1373 24 1 1.7450 -1.7698 1.2093 25 1 4.0829 -2.4859 3.8716 26 1 0.3810 -2.0011 -1.3226 27 1 1.8421 -2.5393 -2.1849 28 1 1.7756 -2.6232 -0.4082 29 1 1.8194 -0.5665 -3.2869 30 1 0.6904 0.4493 -2.3585 31 1 4.5426 0.2166 -2.8334 32 1 4.7197 1.8744 -2.2096 33 1 4.1696 0.5709 -1.1294 34 1 1.0903 2.7255 -1.9103 35 1 2.8139 3.3539 -1.7206 36 1 3.3117 2.7129 -4.1239 37 1 1.5880 2.0846 -4.3130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:41 Heat of formation + Delta-G solvation = 20.139891 kcal Electronic energy + Delta-G solvation = -14990.912888 eV Core-core repulsion = 12768.899204 eV Total energy + Delta-G solvation = -2222.013683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.75716 -36.39765 -32.76089 -30.58074 -28.18206 -27.43579 -26.46150 -24.12014 -22.58641 -22.07122 -19.12828 -18.08084 -16.18484 -15.53981 -14.92409 -14.58076 -14.15053 -13.97857 -13.18468 -12.63931 -12.43638 -12.19384 -11.76513 -11.68485 -11.61702 -11.34788 -11.14351 -11.02226 -10.69463 -10.65228 -10.50681 -10.31081 -10.01146 -9.83611 -9.21922 -9.07331 -8.78729 -8.21833 -7.35801 -5.84983 -3.82109 3.40996 3.47368 3.52000 4.05232 4.59073 4.65247 5.07291 5.19863 5.32868 5.52227 5.54431 5.79163 5.83347 5.84379 5.90885 6.02778 6.06215 6.09470 6.12520 6.20823 6.34203 6.35654 6.52177 6.58846 6.60217 6.70866 6.82201 7.06904 7.09957 7.61254 7.77179 8.00837 8.10712 8.19307 8.63744 9.24209 9.79008 11.27139 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.010579 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.511023 B = 2646.044774 C = 3167.005599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.508 5.508 14 C 0.026 3.974 15 C 0.086 3.914 16 C -0.101 4.101 17 C -0.111 4.111 18 C -0.178 4.178 19 C -0.186 4.186 20 H 0.054 0.946 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.013 0.987 24 H 0.023 0.977 25 H 0.256 0.744 26 H 0.015 0.985 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 5.032 -10.854 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.524 4.524 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.231 5.231 14 C -0.123 4.123 15 C -0.043 4.043 16 C -0.102 4.102 17 C -0.167 4.167 18 C -0.215 4.215 19 C -0.223 4.223 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.352 4.867 -10.666 12.194 hybrid contribution 0.065 0.116 0.028 0.136 sum -3.288 4.983 -10.638 12.198 Atomic orbital electron populations 1.22518 1.00259 1.01223 1.00452 1.21911 0.89684 0.98664 0.91881 0.90992 1.19211 0.96336 0.95573 0.89757 1.21211 0.91691 1.28209 1.11334 0.91885 1.24997 0.97862 0.95919 0.96128 1.69969 1.35110 1.32644 1.16868 0.86683 0.86651 0.77084 0.78121 1.21087 1.21645 1.19811 1.62049 1.58543 1.01519 1.00969 1.22389 0.96063 0.91299 1.02502 1.21628 0.94868 0.93926 0.93834 1.21457 0.97630 0.89978 1.01123 1.21302 0.91148 0.99744 1.04555 1.23041 1.01438 0.99161 0.97885 1.23007 1.02767 1.04960 0.91613 0.92696 0.94252 0.92855 0.96930 0.95922 0.93411 0.96684 0.93012 0.89983 0.91745 0.95151 0.93103 0.94386 0.88672 0.89461 0.89117 0.89258 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 8.50 37.16 0.32 -2.95 16 2 C 0.09 1.77 2.19 -67.72 -0.15 1.62 16 3 H 0.07 1.52 7.02 -51.93 -0.36 1.16 16 4 C 0.03 0.72 4.32 -27.89 -0.12 0.60 16 5 C -0.49 -13.42 8.82 -34.44 -0.30 -13.72 16 6 H 0.06 1.71 5.53 -52.49 -0.29 1.42 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.51 -9.66 3.34 -234.89 -0.78 -10.45 16 14 C 0.03 0.46 8.76 60.07 0.53 0.99 16 15 C 0.09 1.38 4.97 -3.82 -0.02 1.36 16 16 C -0.10 -1.57 1.84 -154.51 -0.29 -1.85 16 17 C -0.11 -1.87 9.34 37.16 0.35 -1.53 16 18 C -0.18 -2.53 9.35 -26.73 -0.25 -2.78 16 19 C -0.19 -2.39 9.97 -26.73 -0.27 -2.66 16 20 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 21 H 0.04 0.62 6.36 -51.93 -0.33 0.29 16 22 H 0.05 0.93 6.34 -51.93 -0.33 0.60 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.02 0.61 6.30 -51.93 -0.33 0.28 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.01 0.25 6.21 -51.93 -0.32 -0.08 16 27 H 0.05 0.83 7.97 -51.93 -0.41 0.41 16 28 H 0.08 1.69 6.34 -51.93 -0.33 1.36 16 29 H 0.06 0.97 7.82 -51.93 -0.41 0.56 16 30 H 0.03 0.47 5.87 -51.93 -0.30 0.17 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.09 1.95 5.35 -51.92 -0.28 1.67 16 34 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -28.92 285.46 -7.28 -36.19 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.21 Total: -0.91 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.30 Total: -19.60 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.05 Total: -36.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.92 -7.28 -36.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.335 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds