Wall clock time and date at job start Mon Mar 30 2020 03:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46864 * 2 1 4 4 C 1.52998 * 109.47416 * 119.99870 * 2 1 3 5 5 C 1.50697 * 109.47175 * 184.56377 * 4 2 1 6 6 H 1.08002 * 120.00190 * 5.19112 * 5 4 2 7 7 C 1.37879 * 120.00337 * 185.18814 * 5 4 2 8 8 N 1.31523 * 119.99541 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00418 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47458 * 89.99993 * 9 7 5 11 11 H 1.48498 * 109.47171 * 209.99844 * 9 7 5 12 12 H 1.48500 * 109.47152 * 329.99643 * 9 7 5 13 13 N 1.46896 * 109.47437 * 240.00424 * 2 1 3 14 14 C 1.46905 * 110.99580 * 304.16200 * 13 2 1 15 15 C 1.46899 * 111.00172 * 68.11147 * 13 2 1 16 16 C 1.53001 * 109.46989 * 76.12370 * 15 13 2 17 17 C 1.52999 * 115.54891 * 40.30224 * 16 15 13 18 18 C 1.52998 * 117.50034 * 254.59792 * 16 15 13 19 19 C 1.53002 * 117.50053 * 185.97005 * 16 15 13 20 20 H 1.09007 * 109.47066 * 299.99710 * 1 2 3 21 21 H 1.08993 * 109.47622 * 60.00117 * 1 2 3 22 22 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47338 * 304.56670 * 4 2 1 24 24 H 1.09001 * 109.46940 * 64.56506 * 4 2 1 25 25 H 0.97002 * 119.99895 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.46841 * 59.60805 * 14 13 2 27 27 H 1.09004 * 109.47260 * 179.60467 * 14 13 2 28 28 H 1.08996 * 109.47254 * 299.60666 * 14 13 2 29 29 H 1.09004 * 109.47247 * 196.12130 * 15 13 2 30 30 H 1.09000 * 109.47593 * 316.12677 * 15 13 2 31 31 H 1.09002 * 109.47467 * 63.20847 * 17 16 15 32 32 H 1.09002 * 109.46978 * 183.21533 * 17 16 15 33 33 H 1.09007 * 109.47147 * 303.21032 * 17 16 15 34 34 H 1.09004 * 117.49912 * 359.97438 * 18 16 15 35 35 H 1.08998 * 117.50246 * 145.01873 * 18 16 15 36 36 H 1.09000 * 117.49988 * 214.97844 * 19 16 15 37 37 H 1.08994 * 117.49589 * 0.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5427 -0.6240 1.3070 6 1 4.0740 -0.0303 0.5778 7 6 4.2396 -1.2930 2.2908 8 7 3.5927 -2.0155 3.1792 9 14 6.1022 -1.1719 2.3629 10 1 6.4909 -0.0211 3.2171 11 1 6.6578 -2.4239 2.9365 12 1 6.6389 -0.9747 0.9924 13 7 2.0197 -0.6924 -1.1994 14 6 1.4691 -2.0517 -1.2842 15 6 1.7132 0.0764 -2.4131 16 6 2.6807 1.2561 -2.5274 17 6 4.1325 0.9581 -2.1477 18 6 2.1372 2.6493 -2.2041 19 6 2.4374 2.2627 -3.6538 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6115 -0.2568 2.1373 24 1 1.7450 -1.7698 1.2093 25 1 4.0829 -2.4859 3.8716 26 1 0.3810 -2.0011 -1.3226 27 1 1.8421 -2.5393 -2.1849 28 1 1.7756 -2.6232 -0.4082 29 1 1.8194 -0.5665 -3.2869 30 1 0.6904 0.4493 -2.3585 31 1 4.5426 0.2166 -2.8334 32 1 4.7197 1.8744 -2.2096 33 1 4.1696 0.5709 -1.1294 34 1 1.0903 2.7255 -1.9103 35 1 2.8139 3.3539 -1.7206 36 1 3.3117 2.7129 -4.1239 37 1 1.5880 2.0846 -4.3130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:40 Heat of formation + Delta-G solvation = 3.902614 kcal Electronic energy + Delta-G solvation = -14991.616989 eV Core-core repulsion = 12768.899204 eV Total energy + Delta-G solvation = -2222.717785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10168 -37.75696 -34.84795 -32.27362 -29.53119 -29.17161 -27.89150 -25.74038 -24.44340 -23.13873 -20.63573 -19.43097 -18.34183 -16.98163 -16.54723 -16.10849 -15.67659 -15.31722 -14.70971 -14.20341 -14.07857 -13.66615 -13.56150 -13.16860 -12.99721 -12.87756 -12.64235 -12.49197 -12.37101 -12.29468 -12.10294 -11.84340 -11.75585 -11.22601 -11.01780 -10.69457 -10.44098 -10.30115 -8.80273 -8.05797 -6.08994 1.42534 1.43330 1.54577 2.49868 2.92223 3.23866 3.36014 3.94275 4.06800 4.16343 4.21374 4.39500 4.43686 4.53260 4.58490 4.71304 4.77799 4.81192 4.84902 5.01707 5.07255 5.14179 5.18311 5.22642 5.26424 5.34552 5.36355 5.37624 5.47083 5.70311 5.81624 5.99887 6.39706 6.54161 6.62298 7.06439 7.56129 9.06579 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.010579 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.511023 B = 2646.044774 C = 3167.005599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.491 4.491 6 H 0.066 0.934 7 C -0.006 4.006 8 N -0.943 5.943 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.528 5.528 14 C 0.030 3.970 15 C 0.090 3.910 16 C -0.126 4.126 17 C -0.105 4.105 18 C -0.183 4.183 19 C -0.157 4.157 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.051 0.949 23 H -0.016 1.016 24 H -0.001 1.001 25 H 0.256 0.744 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 6.121 -13.014 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.009 4.009 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.529 4.529 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.585 5.585 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.251 5.251 14 C -0.118 4.118 15 C -0.037 4.037 16 C -0.126 4.126 17 C -0.162 4.162 18 C -0.220 4.220 19 C -0.194 4.194 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.003 0.997 24 H 0.017 0.983 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.369 5.969 -12.843 14.558 hybrid contribution 0.057 -0.212 0.679 0.714 sum -3.311 5.757 -12.164 13.859 Atomic orbital electron populations 1.22396 0.97899 1.01558 1.01722 1.21536 0.91448 0.97346 0.90535 0.91740 1.19083 0.95388 0.94505 0.91390 1.21578 0.93034 1.27404 1.10867 0.91634 1.25821 1.02532 0.95847 0.95985 1.70105 1.36866 1.33862 1.17714 0.85660 0.81171 0.77079 0.78430 1.20375 1.21544 1.18911 1.61926 1.59368 1.02113 1.01647 1.22303 0.97098 0.90659 1.01697 1.21661 0.95538 0.94027 0.92522 1.21426 0.96504 0.90553 1.04166 1.21164 0.92872 1.00089 1.02048 1.23091 1.01548 0.98040 0.99356 1.23069 1.03633 1.01871 0.90863 0.92737 0.91634 0.92968 0.99738 0.98263 0.93500 0.95033 0.90961 0.93648 0.90388 0.94062 0.93004 0.93280 0.92657 0.89054 0.89395 0.88099 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.00 8.50 71.98 0.61 -5.38 16 2 C 0.10 4.06 2.19 44.91 0.10 4.15 16 3 H 0.06 2.71 7.02 -2.39 -0.02 2.69 16 4 C 0.03 1.75 4.32 29.85 0.13 1.88 16 5 C -0.49 -27.71 8.82 25.60 0.23 -27.49 16 6 H 0.07 3.62 5.53 -2.91 -0.02 3.61 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 8 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 9 Si 0.95 45.80 29.54 68.60 2.03 47.83 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 13 N -0.53 -19.59 3.34 -897.05 -2.99 -22.58 16 14 C 0.03 1.07 8.76 127.69 1.12 2.19 16 15 C 0.09 2.66 4.97 86.30 0.43 3.08 16 16 C -0.13 -3.59 1.84 -52.18 -0.10 -3.68 16 17 C -0.10 -3.41 9.34 71.98 0.67 -2.74 16 18 C -0.18 -4.70 9.35 30.60 0.29 -4.42 16 19 C -0.16 -3.43 9.97 30.60 0.31 -3.12 16 20 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.06 1.88 6.36 -2.39 -0.02 1.86 16 22 H 0.05 1.77 6.34 -2.39 -0.02 1.75 16 23 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 24 H 0.00 -0.05 6.30 -2.39 -0.02 -0.07 16 25 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.03 0.99 6.21 -2.39 -0.01 0.98 16 27 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 28 H 0.04 1.91 6.34 -2.39 -0.02 1.90 16 29 H 0.08 2.08 7.82 -2.39 -0.02 2.06 16 30 H 0.04 1.13 5.87 -2.39 -0.01 1.12 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 33 H 0.05 2.25 5.35 -2.38 -0.01 2.24 16 34 H 0.09 2.26 8.09 -2.39 -0.02 2.24 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -62.90 285.46 4.58 -58.32 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.02 Total: 9.99 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.24 Total: -35.44 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.71 Total: -80.70 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -62.90 4.58 -58.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.218 kcal (2) G-P(sol) polarization free energy of solvation -62.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds