Wall clock time and date at job start Mon Mar 30 2020 03:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 C 1.53000 * 109.46949 * 179.97438 * 14 13 2 16 16 C 1.53005 * 112.84868 * 48.80739 * 15 14 13 17 17 C 1.53778 * 113.61724 * 277.49989 * 15 14 13 18 18 C 1.53786 * 87.08263 * 220.02130 * 17 15 14 19 19 C 1.53784 * 113.61435 * 179.97438 * 15 14 13 20 20 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 21 21 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 23 23 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 24 24 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 25 25 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 26 26 H 1.00902 * 110.99740 * 321.04954 * 13 2 1 27 27 H 1.08996 * 109.47544 * 299.99585 * 14 13 2 28 28 H 1.09005 * 109.47067 * 60.00344 * 14 13 2 29 29 H 1.08998 * 109.47331 * 69.66515 * 16 15 14 30 30 H 1.09002 * 109.47020 * 189.66728 * 16 15 14 31 31 H 1.09001 * 109.47043 * 309.66330 * 16 15 14 32 32 H 1.09003 * 113.61667 * 334.56507 * 17 15 14 33 33 H 1.09002 * 113.61924 * 105.47454 * 17 15 14 34 34 H 1.09008 * 113.61023 * 270.88177 * 18 17 15 35 35 H 1.08999 * 113.61887 * 139.98458 * 18 17 15 36 36 H 1.09000 * 113.61925 * 254.53164 * 19 15 14 37 37 H 1.09003 * 113.61205 * 25.43803 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.4911 0.3564 2.4916 11 1 6.5884 -1.7771 3.6397 12 1 6.6802 -1.6983 1.2174 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 6 2.5962 -0.5331 -3.5741 16 6 1.8674 -1.8587 -3.8038 17 6 4.1283 -0.6532 -3.6269 18 6 4.0182 -0.3918 -5.1384 19 6 2.6991 0.3394 -4.8363 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.7515 -1.7715 1.2057 24 1 1.6053 -0.2617 2.1370 25 1 4.0614 -2.2527 4.0299 26 1 1.4494 -1.4980 -1.4100 27 1 1.0871 0.6162 -2.5526 28 1 2.7589 1.0460 -2.1183 29 1 0.8434 -1.6603 -4.1202 30 1 2.3830 -2.4275 -4.5775 31 1 1.8566 -2.4327 -2.8772 32 1 4.6472 0.1368 -3.0839 33 1 4.4970 -1.6493 -3.3818 34 1 3.8891 -1.2982 -5.7299 35 1 4.8003 0.2605 -5.5268 36 1 1.9143 0.1445 -5.5671 37 1 2.8270 1.4009 -4.6240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:21 Heat of formation + Delta-G solvation = 0.174327 kcal Electronic energy + Delta-G solvation = -14518.116603 eV Core-core repulsion = 12295.237148 eV Total energy + Delta-G solvation = -2222.879455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41666 -36.25164 -32.66096 -30.89446 -28.38412 -27.18192 -25.67489 -25.25946 -22.96962 -21.44134 -19.67996 -17.92527 -16.18302 -15.47588 -14.86482 -14.79184 -14.34352 -13.73418 -13.44411 -12.99683 -12.55698 -12.25637 -12.08706 -11.84389 -11.72006 -11.42450 -11.12618 -11.02265 -10.88900 -10.58930 -10.48578 -10.24456 -9.98120 -9.85809 -9.81258 -9.13078 -8.91489 -8.19311 -7.42316 -5.81816 -3.78874 3.44617 3.48012 3.51826 4.61643 4.63038 4.82682 4.85356 5.04911 5.19283 5.49805 5.55711 5.63052 5.73625 5.80711 5.87400 5.89576 5.94562 6.00498 6.01329 6.10534 6.14248 6.28862 6.30795 6.42609 6.54303 6.60556 6.69016 6.77072 7.10965 7.65554 7.77303 8.12243 8.14693 8.27588 8.67763 9.26232 9.81900 11.30454 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.008774 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.843508 B = 3190.418213 C = 3909.743485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.662 5.662 14 C 0.076 3.924 15 C -0.079 4.079 16 C -0.130 4.130 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.134 4.134 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.257 0.743 26 H 0.330 0.670 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 2.737 -14.451 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.022 4.022 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.293 5.293 14 C -0.053 4.053 15 C -0.079 4.079 16 C -0.187 4.187 17 C -0.155 4.155 18 C -0.183 4.183 19 C -0.171 4.171 20 H 0.055 0.945 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.149 0.851 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.656 2.721 -14.116 14.619 hybrid contribution 0.062 0.126 -0.070 0.157 sum -2.594 2.846 -14.186 14.700 Atomic orbital electron populations 1.22554 0.99744 1.01067 1.00486 1.21789 0.89730 0.98120 0.92520 0.91981 1.19106 0.96189 0.95328 0.89765 1.21116 0.91917 1.32562 1.06756 0.92441 1.25002 0.97900 0.96013 0.96098 1.69954 1.35189 1.37033 1.12533 0.86710 0.86575 0.77884 0.77057 1.20617 1.21697 1.20382 1.60577 1.57657 1.08565 1.02464 1.21895 0.97910 0.95379 0.90162 1.21796 0.96335 0.95669 0.94128 1.21577 0.99047 0.95988 1.02080 1.22863 0.95566 1.02483 0.94618 1.22861 0.97607 1.00171 0.97651 1.23002 0.97636 0.99043 0.97464 0.94494 0.93143 0.92596 0.96604 0.96619 0.93361 0.85134 0.96697 0.91501 0.93160 0.92804 0.91169 0.90080 0.91413 0.90686 0.92050 0.92062 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 9.16 37.16 0.34 -2.77 16 2 C 0.09 1.82 2.53 -67.71 -0.17 1.65 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.92 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.48 -13.93 8.84 -34.44 -0.30 -14.23 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.93 13.29 55.43 0.74 -27.19 16 9 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.66 -12.56 5.83 -106.72 -0.62 -13.18 16 14 C 0.08 1.22 5.02 -3.83 -0.02 1.20 16 15 C -0.08 -1.08 1.17 -153.69 -0.18 -1.26 16 16 C -0.13 -1.65 8.72 37.16 0.32 -1.33 16 17 C -0.12 -1.68 7.21 -25.92 -0.19 -1.87 16 18 C -0.15 -1.68 7.73 -25.89 -0.20 -1.88 16 19 C -0.13 -1.56 7.23 -25.90 -0.19 -1.75 16 20 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.33 5.89 6.34 -39.29 -0.25 5.64 16 27 H 0.01 0.23 7.44 -51.93 -0.39 -0.16 16 28 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.62 7.34 -51.93 -0.38 0.24 16 31 H 0.07 0.98 6.30 -51.93 -0.33 0.66 16 32 H 0.08 1.24 7.96 -51.93 -0.41 0.82 16 33 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.07 0.80 7.64 -51.92 -0.40 0.41 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 293.02 15.07 4.42 4.42 Total: -1.00 -30.12 293.02 -8.00 -38.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.69 Total: 0.51 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -0.81 Total: -20.17 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.11 Total: -40.37 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.12 -8.00 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.291 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds