Wall clock time and date at job start Mon Mar 30 2020 03:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 C 1.53000 * 109.46949 * 179.97438 * 14 13 2 16 16 C 1.53005 * 112.84868 * 48.80739 * 15 14 13 17 17 C 1.53778 * 113.61724 * 277.49989 * 15 14 13 18 18 C 1.53786 * 87.08263 * 220.02130 * 17 15 14 19 19 C 1.53784 * 113.61435 * 179.97438 * 15 14 13 20 20 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 21 21 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 23 23 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 24 24 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 25 25 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 26 26 H 1.00902 * 110.99740 * 321.04954 * 13 2 1 27 27 H 1.08996 * 109.47544 * 299.99585 * 14 13 2 28 28 H 1.09005 * 109.47067 * 60.00344 * 14 13 2 29 29 H 1.08998 * 109.47331 * 69.66515 * 16 15 14 30 30 H 1.09002 * 109.47020 * 189.66728 * 16 15 14 31 31 H 1.09001 * 109.47043 * 309.66330 * 16 15 14 32 32 H 1.09003 * 113.61667 * 334.56507 * 17 15 14 33 33 H 1.09002 * 113.61924 * 105.47454 * 17 15 14 34 34 H 1.09008 * 113.61023 * 270.88177 * 18 17 15 35 35 H 1.08999 * 113.61887 * 139.98458 * 18 17 15 36 36 H 1.09000 * 113.61925 * 254.53164 * 19 15 14 37 37 H 1.09003 * 113.61205 * 25.43803 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.4911 0.3564 2.4916 11 1 6.5884 -1.7771 3.6397 12 1 6.6802 -1.6983 1.2174 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 6 2.5962 -0.5331 -3.5741 16 6 1.8674 -1.8587 -3.8038 17 6 4.1283 -0.6532 -3.6269 18 6 4.0182 -0.3918 -5.1384 19 6 2.6991 0.3394 -4.8363 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.7515 -1.7715 1.2057 24 1 1.6053 -0.2617 2.1370 25 1 4.0614 -2.2527 4.0299 26 1 1.4494 -1.4980 -1.4100 27 1 1.0871 0.6162 -2.5526 28 1 2.7589 1.0460 -2.1183 29 1 0.8434 -1.6603 -4.1202 30 1 2.3830 -2.4275 -4.5775 31 1 1.8566 -2.4327 -2.8772 32 1 4.6472 0.1368 -3.0839 33 1 4.4970 -1.6493 -3.3818 34 1 3.8891 -1.2982 -5.7299 35 1 4.8003 0.2605 -5.5268 36 1 1.9143 0.1445 -5.5671 37 1 2.8270 1.4009 -4.6240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:21 Heat of formation + Delta-G solvation = -17.817244 kcal Electronic energy + Delta-G solvation = -14518.896777 eV Core-core repulsion = 12295.237148 eV Total energy + Delta-G solvation = -2223.659628 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.50523 -37.83191 -34.77609 -32.42791 -29.66232 -29.02170 -26.86362 -26.35244 -24.98671 -22.59141 -21.40335 -19.00326 -18.36246 -16.85421 -16.38389 -16.19933 -15.98699 -15.07685 -14.78318 -14.32065 -14.20782 -13.63625 -13.50067 -13.24370 -13.19862 -12.93651 -12.78097 -12.54080 -12.39494 -12.21827 -11.97603 -11.84435 -11.39645 -11.22839 -11.11767 -10.90060 -10.69639 -10.47327 -8.90958 -8.08830 -6.13444 1.40467 1.43774 1.51151 2.47646 3.22722 3.40723 3.80889 3.81556 3.96082 4.06591 4.24808 4.37502 4.50812 4.54028 4.62186 4.73692 4.81096 4.91097 4.96696 4.98983 5.03311 5.11287 5.14459 5.22483 5.26143 5.31816 5.34565 5.50389 5.57261 5.68722 5.74885 5.91020 6.36673 6.54836 6.79553 7.00307 7.51795 9.03256 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.008774 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.843508 B = 3190.418213 C = 3909.743485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.497 4.497 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.080 3.920 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.132 4.132 18 C -0.133 4.133 19 C -0.123 4.123 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.055 0.945 23 H -0.011 1.011 24 H -0.009 1.009 25 H 0.258 0.742 26 H 0.336 0.664 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 3.268 -16.489 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.535 4.535 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.311 5.311 14 C -0.049 4.049 15 C -0.083 4.083 16 C -0.184 4.184 17 C -0.169 4.169 18 C -0.170 4.170 19 C -0.161 4.161 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.577 3.262 -16.172 16.698 hybrid contribution 0.031 -0.048 0.578 0.581 sum -2.546 3.214 -15.594 16.125 Atomic orbital electron populations 1.22402 0.96853 1.01679 1.01817 1.21456 0.92002 0.96720 0.91094 0.92734 1.18994 0.95110 0.94108 0.91718 1.21442 0.93402 1.32166 1.06534 0.92763 1.25867 1.02934 0.95718 0.95788 1.70087 1.37120 1.37987 1.13195 0.85635 0.80601 0.78333 0.77218 1.19541 1.21163 1.19776 1.60415 1.58156 1.09478 1.03041 1.21898 0.98453 0.94712 0.89842 1.21877 0.95700 0.96579 0.94183 1.21548 1.00024 0.95214 1.01582 1.22903 0.96032 1.00979 0.97035 1.22815 0.97875 1.00871 0.95417 1.22952 0.98108 0.98746 0.96263 0.91762 0.92904 0.92605 0.99223 0.99124 0.93284 0.84465 0.95196 0.92924 0.91600 0.91569 0.93032 0.91804 0.92992 0.89403 0.91034 0.90249 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.64 9.16 71.98 0.66 -4.98 16 2 C 0.10 4.03 2.53 44.91 0.11 4.14 16 3 H 0.05 2.33 7.80 -2.39 -0.02 2.31 16 4 C 0.04 2.05 4.65 29.85 0.14 2.19 16 5 C -0.50 -29.11 8.84 25.60 0.23 -28.89 16 6 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 8 N -0.94 -59.20 13.29 21.45 0.28 -58.91 16 9 Si 0.96 46.59 29.54 68.60 2.03 48.62 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.68 -25.59 5.83 -491.57 -2.86 -28.45 16 14 C 0.08 2.45 5.02 86.30 0.43 2.89 16 15 C -0.08 -2.13 1.17 -51.65 -0.06 -2.19 16 16 C -0.13 -2.95 8.72 71.98 0.63 -2.32 16 17 C -0.13 -3.65 7.21 31.12 0.22 -3.43 16 18 C -0.13 -2.71 7.73 31.14 0.24 -2.47 16 19 C -0.12 -2.50 7.23 31.14 0.23 -2.27 16 20 H 0.06 1.81 7.45 -2.38 -0.02 1.79 16 21 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 25 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.34 11.86 6.34 -89.69 -0.57 11.29 16 27 H 0.03 0.83 7.44 -2.39 -0.02 0.82 16 28 H 0.05 1.75 7.86 -2.38 -0.02 1.73 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.37 7.34 -2.39 -0.02 1.35 16 31 H 0.05 1.39 6.30 -2.39 -0.02 1.38 16 32 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 33 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.09 1.60 7.64 -2.38 -0.02 1.58 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -64.98 293.02 3.18 -61.80 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.44 Total: 14.28 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.29 Total: -37.32 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.58 Total: -87.37 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -64.98 3.18 -61.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.980 kcal (2) G-P(sol) polarization free energy of solvation -64.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds