Wall clock time and date at job start Mon Mar 30 2020 03:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53783 * 113.61625 * 252.49802 * 14 13 2 16 16 C 1.53776 * 87.08107 * 220.02059 * 15 14 13 17 17 C 1.52998 * 113.61717 * 270.87720 * 16 15 14 18 18 C 1.53005 * 113.61302 * 139.97778 * 16 15 14 19 19 C 1.53774 * 87.08176 * 25.43083 * 16 15 14 20 20 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 22 22 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 23 23 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 24 24 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 27 27 H 1.09003 * 112.85209 * 23.80230 * 14 13 2 28 28 H 1.09007 * 113.61345 * 334.56838 * 15 14 13 29 29 H 1.08994 * 113.61643 * 105.46814 * 15 14 13 30 30 H 1.08993 * 109.47306 * 157.49587 * 17 16 15 31 31 H 1.09000 * 109.47450 * 277.50587 * 17 16 15 32 32 H 1.09006 * 109.46394 * 37.49931 * 17 16 15 33 33 H 1.08998 * 109.47341 * 322.49943 * 18 16 15 34 34 H 1.09001 * 109.46866 * 82.50505 * 18 16 15 35 35 H 1.09007 * 109.46818 * 202.50092 * 18 16 15 36 36 H 1.09002 * 113.61505 * 220.01955 * 19 16 15 37 37 H 1.08998 * 113.69560 * 89.13082 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 3.5152 0.6157 2.7438 16 6 3.0598 0.4914 4.2073 17 6 2.4879 1.7882 4.7835 18 6 4.1021 -0.1573 5.1205 19 6 1.9844 -0.4875 3.7073 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.6055 -0.2619 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0246 -1.4984 -3.1541 26 1 1.4495 -1.4978 1.4100 27 1 1.4067 1.0722 2.2481 28 1 4.2656 -0.1207 2.4559 29 1 3.7851 1.6315 2.4552 30 1 1.8411 1.5557 5.6294 31 1 3.3044 2.4293 5.1158 32 1 1.9108 2.3034 4.0156 33 1 4.6134 -0.9539 4.5799 34 1 4.8279 0.5931 5.4339 35 1 3.6075 -0.5733 5.9983 36 1 1.0185 -0.3623 4.1966 37 1 2.3148 -1.5260 3.6826 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:02 Heat of formation + Delta-G solvation = 0.763306 kcal Electronic energy + Delta-G solvation = -14483.463451 eV Core-core repulsion = 12260.609536 eV Total energy + Delta-G solvation = -2222.853915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.49811 -35.96820 -32.46627 -30.91753 -28.17539 -27.45605 -27.27589 -25.38937 -22.76102 -20.81879 -19.66994 -17.91514 -16.51759 -15.56818 -14.89505 -14.39241 -14.05860 -13.67032 -13.28790 -13.11541 -12.64710 -12.50816 -12.25114 -12.09406 -11.65098 -11.62174 -11.57016 -11.29243 -10.72533 -10.66272 -10.42796 -10.21491 -9.99744 -9.76537 -9.58488 -9.40802 -8.96765 -8.36695 -7.53245 -5.85210 -3.78390 3.40078 3.47052 3.49907 4.59593 4.68786 4.78540 4.88003 5.12173 5.21327 5.47040 5.49942 5.62785 5.69531 5.70628 5.80921 5.82420 5.93527 5.94668 5.98991 6.08823 6.11200 6.17771 6.31881 6.40812 6.51430 6.54033 6.73219 6.81346 6.93262 7.23368 7.40292 7.92120 8.00750 8.18888 8.79353 9.27280 9.78277 11.29027 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037554 B = 0.007753 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.411962 B = 3610.654416 C = 4091.000283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.097 3.903 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.486 4.486 6 H 0.077 0.923 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.651 5.651 14 C 0.064 3.936 15 C -0.112 4.112 16 C -0.095 4.095 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.135 4.135 20 H 0.050 0.950 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.258 0.742 26 H 0.330 0.670 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 2.847 12.516 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.013 4.013 3 H 0.087 0.913 4 C -0.042 4.042 5 C -0.524 4.524 6 H 0.095 0.905 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.281 5.281 14 C -0.046 4.046 15 C -0.151 4.151 16 C -0.095 4.095 17 C -0.183 4.183 18 C -0.189 4.189 19 C -0.173 4.173 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.464 2.876 12.229 14.613 hybrid contribution -1.365 -0.471 -0.623 1.572 sum -8.829 2.405 11.606 14.779 Atomic orbital electron populations 1.22612 0.99613 1.01124 1.00768 1.21602 0.89530 0.98275 0.91851 0.91306 1.19607 0.97878 0.95036 0.91670 1.21060 0.89533 1.33456 1.08364 0.90453 1.25018 0.94677 0.96421 0.97879 1.69917 1.06447 1.46543 1.32216 0.86872 0.80342 0.80609 0.81897 1.20640 1.19394 1.21745 1.60616 1.57002 1.08187 1.02257 1.22907 0.97164 0.95275 0.89256 1.23163 0.97734 1.01658 0.92511 1.21695 0.96522 0.95590 0.95725 1.21577 1.00399 0.96019 1.00278 1.21694 0.98012 1.00367 0.98838 1.23312 0.98081 0.99312 0.96551 0.93113 0.94126 0.92607 0.96708 0.97139 0.93175 0.85197 0.92121 0.88819 0.92367 0.92943 0.92605 0.92615 0.92214 0.92968 0.93220 0.92451 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 9.15 37.16 0.34 -2.59 16 2 C 0.10 1.93 2.38 -67.71 -0.16 1.77 16 3 H 0.07 1.44 7.84 -51.93 -0.41 1.04 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -14.06 9.39 -34.44 -0.32 -14.39 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 9 Si 0.87 22.36 27.47 -169.99 -4.67 17.69 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 N -0.65 -12.16 6.02 -98.89 -0.60 -12.76 16 14 C 0.06 1.02 3.49 -66.90 -0.23 0.78 16 15 C -0.11 -1.82 6.99 -25.92 -0.18 -2.00 16 16 C -0.09 -1.22 1.39 -153.70 -0.21 -1.43 16 17 C -0.13 -1.40 9.07 37.16 0.34 -1.06 16 18 C -0.13 -1.56 9.20 37.16 0.34 -1.22 16 19 C -0.13 -1.79 6.80 -25.92 -0.18 -1.96 16 20 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 21 H 0.04 0.58 7.74 -51.93 -0.40 0.18 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.33 5.66 8.28 -39.29 -0.33 5.33 16 27 H 0.06 0.94 7.00 -51.93 -0.36 0.58 16 28 H 0.09 1.75 7.96 -51.92 -0.41 1.34 16 29 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.63 7.34 -51.93 -0.38 0.25 16 33 H 0.06 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -30.72 293.57 -7.40 -38.12 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.86 Total: 1.26 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.47 Total: -20.65 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.18 Total: -40.85 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.72 -7.40 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.884 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds