Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47196 * 2 1 4 4 C 1.52999 * 109.47067 * 120.00597 * 2 1 3 5 5 C 1.50700 * 109.47227 * 185.00241 * 4 2 1 6 6 H 1.08002 * 119.99813 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99918 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47271 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47226 * 119.99520 * 9 7 5 12 12 H 1.48503 * 109.47285 * 239.99836 * 9 7 5 13 13 N 1.46906 * 109.46850 * 240.00211 * 2 1 3 14 14 C 1.46895 * 110.99747 * 85.00345 * 13 2 1 15 15 C 1.53003 * 109.46862 * 179.97438 * 14 13 2 16 16 C 1.52995 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47289 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.51964 * 116.28130 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 H 1.09001 * 109.47465 * 300.00125 * 1 2 3 21 21 H 1.09004 * 109.47311 * 59.99576 * 1 2 3 22 22 H 1.09000 * 109.47821 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46525 * 304.99257 * 4 2 1 24 24 H 1.08991 * 109.47461 * 64.99406 * 4 2 1 25 25 H 0.97001 * 119.99527 * 180.02562 * 8 7 5 26 26 H 1.00904 * 110.99370 * 208.95775 * 13 2 1 27 27 H 1.08998 * 109.47300 * 60.00026 * 14 13 2 28 28 H 1.08996 * 109.46994 * 299.99282 * 14 13 2 29 29 H 1.08999 * 109.47309 * 59.99446 * 15 14 13 30 30 H 1.09005 * 109.46839 * 299.99726 * 15 14 13 31 31 H 1.08999 * 109.47504 * 59.99435 * 16 15 14 32 32 H 1.09005 * 109.46851 * 299.99589 * 16 15 14 33 33 H 1.09002 * 115.54973 * 330.57913 * 17 16 15 34 34 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 35 35 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 36 36 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 37 37 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1937 2.3577 8 7 3.5763 -1.8382 3.2993 9 14 6.0921 -1.0625 2.4361 10 1 6.5838 -0.2929 1.2651 11 1 6.4871 -0.3670 3.6873 12 1 6.6855 -2.4237 2.4178 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5961 -0.5328 -3.5742 16 6 2.6622 0.4205 -4.7691 17 6 3.1765 -0.3348 -5.9963 18 6 2.2279 -0.4760 -7.1884 19 6 3.4243 0.4741 -7.2711 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 1.6054 -0.2618 2.1369 24 1 1.7516 -1.7715 1.2055 25 1 4.0607 -2.2450 4.0347 26 1 2.9172 -1.1206 -1.0287 27 1 2.7589 1.0462 -2.1182 28 1 1.0871 0.6163 -2.5525 29 1 1.9201 -1.3566 -3.8031 30 1 3.5917 -0.9262 -3.3683 31 1 3.3385 1.2440 -4.5400 32 1 1.6669 0.8142 -4.9752 33 1 3.8507 -1.1657 -5.7885 34 1 2.2780 -1.3998 -7.7648 35 1 1.2370 -0.0311 -7.0984 36 1 3.2205 1.5444 -7.2356 37 1 4.2615 0.1754 -7.9020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = -9.729232 kcal Electronic energy + Delta-G solvation = -13760.036267 eV Core-core repulsion = 11536.727361 eV Total energy + Delta-G solvation = -2223.308906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.92490 -36.63568 -33.58369 -32.21268 -29.44582 -27.36276 -25.11051 -22.95958 -22.49394 -20.98556 -20.46737 -19.26475 -16.34600 -15.78714 -15.38165 -14.81546 -14.40797 -14.29695 -13.68865 -13.16338 -12.49060 -12.05226 -11.86812 -11.74611 -11.64120 -11.45213 -11.24426 -11.09136 -10.86928 -10.66028 -10.60218 -10.47625 -10.15881 -10.08869 -9.86762 -9.17749 -9.03459 -8.38663 -7.58308 -6.01643 -4.04592 3.29472 3.37330 3.40457 3.70286 4.44124 4.50608 4.81337 4.84396 5.07256 5.21527 5.34792 5.36331 5.49629 5.58592 5.71895 5.81968 5.93833 5.97722 5.98707 6.00688 6.07558 6.23156 6.27592 6.36575 6.49800 6.52356 6.62608 6.96778 6.99068 7.56929 7.66392 7.98585 8.11622 8.33228 8.40605 9.01843 9.59572 11.09361 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.005874 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.896156 B = 4765.327595 C = 5497.779892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.685 5.685 14 C 0.059 3.941 15 C -0.114 4.114 16 C -0.087 4.087 17 C -0.148 4.148 18 C -0.182 4.182 19 C -0.186 4.186 20 H 0.047 0.953 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.021 0.979 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.353 0.647 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 3.771 -16.038 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.046 0.954 4 C -0.018 4.018 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.319 5.319 14 C -0.071 4.071 15 C -0.152 4.152 16 C -0.125 4.125 17 C -0.166 4.166 18 C -0.219 4.219 19 C -0.223 4.223 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.174 0.826 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.642 3.424 -16.029 16.602 hybrid contribution 1.851 0.586 0.351 1.973 sum -0.790 4.010 -15.678 16.202 Atomic orbital electron populations 1.21790 0.96819 1.01266 0.99382 1.21607 0.93313 0.95830 0.91549 0.95444 1.19289 0.95414 0.96207 0.90865 1.21219 0.92265 1.34336 1.08282 0.92992 1.24991 0.98242 0.95197 0.95709 1.69976 1.35384 1.35695 1.11971 0.86580 0.85981 0.77778 0.77908 1.19863 1.21049 1.20949 1.60563 1.34645 1.32212 1.04457 1.21931 0.99413 0.94281 0.91461 1.21538 1.01620 0.98504 0.93500 1.21153 1.00582 0.97800 0.92987 1.22388 1.02678 1.01902 0.89630 1.23016 0.95131 1.01332 1.02435 1.22958 1.00186 0.97803 1.01366 0.93393 0.94573 0.92682 0.96103 0.95588 0.93017 0.82603 0.96150 0.92167 0.91260 0.92088 0.91826 0.92010 0.87803 0.89121 0.88896 0.88983 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.41 37.16 0.35 -2.15 16 2 C 0.09 1.85 2.59 -67.71 -0.18 1.68 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.38 16 5 C -0.52 -14.55 8.12 -34.44 -0.28 -14.83 16 6 H 0.05 1.41 7.49 -52.49 -0.39 1.02 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.69 -13.57 6.31 -106.73 -0.67 -14.25 16 14 C 0.06 0.96 5.48 -3.83 -0.02 0.94 16 15 C -0.11 -1.57 5.43 -26.73 -0.15 -1.71 16 16 C -0.09 -1.01 5.50 -26.73 -0.15 -1.16 16 17 C -0.15 -1.57 5.73 -90.61 -0.52 -2.09 16 18 C -0.18 -1.72 10.18 -26.73 -0.27 -1.99 16 19 C -0.19 -1.73 10.25 -26.73 -0.27 -2.00 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.35 7.56 7.21 -39.29 -0.28 7.28 16 27 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 28 H 0.06 0.94 7.44 -51.93 -0.39 0.56 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 33 H 0.10 1.11 8.08 -51.93 -0.42 0.70 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -28.91 302.34 -8.99 -37.90 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.88 Total: 2.53 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.71 Total: -21.31 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.06 Total: -40.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.91 -8.99 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.168 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds