Wall clock time and date at job start Mon Mar 30 2020 03:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47158 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47265 * 119.99969 * 9 7 5 12 12 H 1.48503 * 109.46681 * 239.99686 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.47493 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47208 * 179.97438 * 16 15 14 18 18 C 1.52997 * 117.49763 * 243.74912 * 17 16 15 19 19 C 1.52995 * 117.49713 * 175.08815 * 17 16 15 20 20 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 24 24 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 25 25 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 26 26 H 1.00901 * 111.00276 * 151.05158 * 13 2 1 27 27 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 28 28 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 29 29 H 1.09004 * 109.47258 * 300.00035 * 15 14 13 30 30 H 1.08994 * 109.47532 * 59.99762 * 15 14 13 31 31 H 1.08995 * 109.46568 * 300.00030 * 16 15 14 32 32 H 1.09003 * 109.46678 * 59.99669 * 16 15 14 33 33 H 1.09002 * 115.55059 * 29.41627 * 17 16 15 34 34 H 1.09001 * 117.50295 * 359.97438 * 18 17 16 35 35 H 1.08997 * 117.50234 * 145.02570 * 18 17 16 36 36 H 1.09010 * 117.49676 * 214.97991 * 19 17 16 37 37 H 1.08998 * 117.50250 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.5838 -0.2920 -1.2653 11 1 6.6855 -2.4227 -2.4193 12 1 6.4871 -0.3650 -3.6871 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6609 0.4201 4.7695 17 6 3.1740 -0.3355 5.9970 18 6 2.2235 -0.4774 7.1874 19 6 3.4204 0.4730 7.2722 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.7517 -1.7715 -1.2055 24 1 1.6055 -0.2618 -2.1369 25 1 4.0609 -2.2439 -4.0352 26 1 2.9173 -1.1205 1.0288 27 1 2.7588 1.0462 2.1183 28 1 1.0870 0.6163 2.5525 29 1 1.9200 -1.3567 3.8031 30 1 3.5915 -0.9263 3.3684 31 1 3.3367 1.2441 4.5409 32 1 1.6652 0.8131 4.9751 33 1 3.8484 -1.1664 5.7896 34 1 1.2328 -0.0321 7.0964 35 1 2.2729 -1.4013 7.7636 36 1 4.2568 0.1739 7.9041 37 1 3.2174 1.5434 7.2366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:09 Heat of formation + Delta-G solvation = -26.002627 kcal Electronic energy + Delta-G solvation = -13760.667394 eV Core-core repulsion = 11536.652821 eV Total energy + Delta-G solvation = -2224.014573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.91362 -38.08142 -35.23890 -33.97215 -30.89768 -29.29352 -26.39081 -24.92110 -23.21130 -22.23082 -21.40788 -20.91678 -18.52771 -16.94709 -16.63267 -16.50886 -15.86263 -15.53069 -14.89110 -14.79135 -13.94630 -13.54156 -13.51548 -13.32139 -13.01686 -12.68746 -12.57946 -12.50581 -12.34673 -12.30278 -12.10957 -11.86890 -11.64604 -11.26655 -11.04156 -10.90831 -10.69342 -10.58663 -9.18098 -8.20278 -6.31076 1.38824 1.39509 1.51728 2.39686 2.94537 3.11199 3.40214 3.84581 4.05246 4.10790 4.20646 4.28748 4.33750 4.45009 4.64221 4.71397 4.77612 4.80507 4.81567 4.88439 4.99036 5.02731 5.10573 5.20952 5.27144 5.29571 5.33032 5.40021 5.46981 5.50143 5.57898 5.83417 6.20305 6.43725 6.65932 6.84186 7.37864 8.91687 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.030679 B = 0.005873 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.448973 B = 4766.267880 C = 5498.252944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.093 3.907 3 H 0.022 0.978 4 C 0.026 3.974 5 C -0.535 4.535 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.689 5.689 14 C 0.060 3.940 15 C -0.105 4.105 16 C -0.080 4.080 17 C -0.164 4.164 18 C -0.180 4.180 19 C -0.180 4.180 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.061 0.939 23 H -0.003 1.003 24 H -0.005 1.005 25 H 0.263 0.737 26 H 0.341 0.659 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 4.518 17.734 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.017 4.017 3 H 0.040 0.960 4 C -0.011 4.011 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.321 5.321 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.117 4.117 17 C -0.182 4.182 18 C -0.217 4.217 19 C -0.217 4.217 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.072 0.928 26 H 0.160 0.840 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.107 4.184 17.745 18.353 hybrid contribution 1.643 0.350 -0.872 1.893 sum -0.464 4.534 16.873 17.478 Atomic orbital electron populations 1.21706 0.94441 1.01423 1.00933 1.21448 0.95209 0.94718 0.90297 0.95962 1.19150 0.94926 0.94739 0.92283 1.21545 0.93265 1.34171 1.08324 0.92592 1.25905 1.03463 0.94743 0.95277 1.70102 1.37535 1.36683 1.12729 0.85443 0.79655 0.77994 0.78193 1.18793 1.20352 1.20574 1.60624 1.33858 1.32949 1.04663 1.22031 1.00147 0.93786 0.90946 1.21449 1.00875 0.98651 0.93302 1.21061 1.01106 0.97215 0.92363 1.22336 1.03673 1.02393 0.89825 1.23112 0.95269 1.01792 1.01488 1.23048 1.00420 0.98052 1.00152 0.92872 0.93214 0.91985 0.98425 0.98675 0.92782 0.83960 0.96625 0.90982 0.91504 0.92860 0.91889 0.91267 0.88279 0.88486 0.88366 0.88219 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.41 71.98 0.68 -3.92 16 2 C 0.09 3.98 2.59 44.92 0.12 4.10 16 3 H 0.02 0.98 7.80 -2.39 -0.02 0.96 16 4 C 0.03 1.41 4.57 29.85 0.14 1.55 16 5 C -0.54 -30.12 8.12 25.60 0.21 -29.91 16 6 H 0.06 3.04 7.49 -2.91 -0.02 3.02 16 7 C 0.00 0.24 5.46 84.66 0.46 0.71 16 8 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 9 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 N -0.69 -27.00 6.31 -491.56 -3.10 -30.10 16 14 C 0.06 1.88 5.48 86.30 0.47 2.35 16 15 C -0.10 -2.76 5.43 30.59 0.17 -2.59 16 16 C -0.08 -1.69 5.50 30.60 0.17 -1.53 16 17 C -0.16 -3.18 5.73 -10.80 -0.06 -3.24 16 18 C -0.18 -2.99 10.18 30.62 0.31 -2.67 16 19 C -0.18 -2.92 10.25 30.62 0.31 -2.60 16 20 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 23 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 24 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.34 14.69 7.21 -89.69 -0.65 14.05 16 27 H 0.02 0.51 8.06 -2.39 -0.02 0.49 16 28 H 0.07 2.09 7.44 -2.38 -0.02 2.07 16 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16 33 H 0.10 2.00 8.08 -2.39 -0.02 1.98 16 34 H 0.10 1.53 8.03 -2.39 -0.02 1.51 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -61.45 302.34 2.54 -58.91 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.36 Total: 19.06 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 2.97 Total: -37.76 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.82 Total: -86.48 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.45 2.54 -58.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.905 kcal (2) G-P(sol) polarization free energy of solvation -61.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds