Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47477 * 239.99733 * 2 1 3 5 5 C 1.50697 * 109.46995 * 174.99956 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46900 * 109.47233 * 119.99061 * 2 1 3 14 14 C 1.46893 * 111.00307 * 275.00478 * 13 2 1 15 15 H 1.08997 * 110.43679 * 36.08607 * 14 13 2 16 16 C 1.54889 * 110.48852 * 273.54130 * 14 13 2 17 17 C 1.54883 * 102.75484 * 203.37928 * 16 14 13 18 18 C 1.54274 * 104.19437 * 37.94547 * 17 16 14 19 19 H 1.08996 * 110.03263 * 95.67001 * 18 17 16 20 20 C 1.52995 * 110.03129 * 217.05812 * 18 17 16 21 21 C 1.53880 * 106.59412 * 336.39088 * 18 17 16 22 22 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47358 * 300.00203 * 1 2 3 24 24 H 1.08995 * 109.47224 * 60.00941 * 1 2 3 25 25 H 1.08998 * 109.47065 * 54.99382 * 4 2 1 26 26 H 1.09001 * 109.46892 * 294.99646 * 4 2 1 27 27 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 28 28 H 1.00899 * 111.00073 * 151.04462 * 13 2 1 29 29 H 1.08997 * 110.75567 * 321.70248 * 16 14 13 30 30 H 1.09007 * 110.75028 * 84.87733 * 16 14 13 31 31 H 1.08998 * 110.48768 * 156.62032 * 17 16 14 32 32 H 1.08997 * 110.48697 * 279.13691 * 17 16 14 33 33 H 1.09002 * 109.47459 * 58.54784 * 20 18 17 34 34 H 1.09003 * 109.46870 * 178.54313 * 20 18 17 35 35 H 1.09000 * 109.47600 * 298.54624 * 20 18 17 36 36 H 1.09005 * 110.03071 * 240.71215 * 21 18 17 37 37 H 1.08999 * 110.02892 * 119.29046 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1936 -2.3576 8 7 3.5771 -1.8431 -3.2961 9 14 6.0916 -1.0551 -2.4403 10 1 6.7056 -2.2034 -1.7265 11 1 6.5260 -1.0654 -3.8603 12 1 6.5225 0.2136 -1.8000 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2229 2.3469 15 1 1.2524 0.9287 2.3165 16 6 3.4351 0.9771 2.3654 17 6 3.5831 1.3773 3.8543 18 6 3.0270 0.1646 4.6291 19 1 3.8423 -0.4964 4.9230 20 6 2.2647 0.6389 5.8678 21 6 2.0729 -0.5694 3.6705 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.6054 -0.2619 -2.1369 26 1 1.7518 -1.7716 -1.2054 27 1 4.0616 -2.2505 -4.0311 28 1 2.9173 -1.1203 1.0289 29 1 4.2485 0.3191 2.0596 30 1 3.3938 1.8600 1.7274 31 1 4.6316 1.5407 4.1031 32 1 2.9972 2.2710 4.0691 33 1 1.4527 1.2996 5.5640 34 1 1.8541 -0.2230 6.3939 35 1 2.9438 1.1780 6.5283 36 1 1.0660 -0.5877 4.0875 37 1 2.4252 -1.5866 3.4995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = -37.458775 kcal Electronic energy + Delta-G solvation = -14517.771266 eV Core-core repulsion = 12293.259917 eV Total energy + Delta-G solvation = -2224.511349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.62723 -35.70366 -32.67034 -31.07557 -29.17756 -27.36762 -26.96915 -24.14807 -22.90741 -20.27529 -19.43786 -19.15750 -16.30362 -15.66461 -15.30685 -14.43661 -14.31622 -13.46347 -13.21082 -12.98782 -12.86516 -12.15505 -11.98597 -11.73171 -11.50748 -11.33850 -11.14992 -10.83238 -10.68612 -10.57801 -10.52857 -10.44131 -10.27864 -10.20124 -10.03026 -9.17617 -9.02733 -8.37691 -7.50587 -6.00857 -4.03502 3.30294 3.37085 3.39421 4.44431 4.70346 4.88187 4.93460 5.19844 5.36930 5.45864 5.56626 5.68598 5.73394 5.77920 5.96298 5.99837 6.02892 6.05586 6.13308 6.22888 6.26673 6.31326 6.38289 6.51795 6.56858 6.64691 6.69284 6.98140 7.00278 7.60271 7.67822 7.99722 8.14750 8.35595 8.42314 9.02906 9.60406 11.10167 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032193 B = 0.008211 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.546385 B = 3409.337319 C = 4035.688486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.086 3.914 15 H 0.072 0.928 16 C -0.154 4.154 17 C -0.117 4.117 18 C -0.099 4.099 19 H 0.067 0.933 20 C -0.142 4.142 21 C -0.109 4.109 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.020 0.980 26 H 0.025 0.975 27 H 0.260 0.740 28 H 0.355 0.645 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 4.745 13.551 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.310 5.310 14 C -0.025 4.025 15 H 0.090 0.910 16 C -0.194 4.194 17 C -0.155 4.155 18 C -0.118 4.118 19 H 0.086 0.914 20 C -0.199 4.199 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.176 0.824 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.619 4.379 13.526 14.456 hybrid contribution 1.888 0.619 -0.407 2.028 sum -0.731 4.998 13.119 14.057 Atomic orbital electron populations 1.21809 0.96940 1.01245 0.99333 1.21585 0.93137 0.95942 0.91528 0.95349 1.19280 0.95413 0.96172 0.90883 1.21188 0.92243 1.34170 1.08365 0.92921 1.24991 0.98138 0.95282 0.95735 1.69965 1.35433 1.35526 1.12137 0.86657 0.86111 0.78394 0.77218 1.20633 1.21248 1.20024 1.60609 1.34659 1.31513 1.04251 1.22382 0.95482 0.93111 0.91517 0.91017 1.23230 0.99465 1.00980 0.95703 1.22356 1.00181 0.97444 0.95508 1.21757 0.97934 0.96935 0.95161 0.91435 1.21872 0.99918 1.00790 0.97355 1.22207 0.98677 0.99605 0.94268 0.92712 0.94592 0.93447 0.96194 0.95656 0.92996 0.82382 0.91138 0.91949 0.92346 0.91985 0.92763 0.92958 0.93215 0.92106 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.40 37.16 0.35 -2.15 16 2 C 0.09 1.84 2.46 -67.71 -0.17 1.68 16 3 H 0.03 0.62 7.74 -51.93 -0.40 0.21 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.38 16 5 C -0.52 -14.34 8.11 -34.44 -0.28 -14.62 16 6 H 0.05 1.41 7.50 -52.49 -0.39 1.01 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.18 6.08 -98.01 -0.60 -13.77 16 14 C 0.09 1.39 2.95 -66.06 -0.19 1.20 16 15 H 0.07 1.16 7.20 -51.93 -0.37 0.79 16 16 C -0.15 -2.41 6.31 -24.74 -0.16 -2.57 16 17 C -0.12 -1.49 6.36 -25.07 -0.16 -1.65 16 18 C -0.10 -1.20 3.50 -89.50 -0.31 -1.52 16 19 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.14 -1.45 8.84 37.15 0.33 -1.13 16 21 C -0.11 -1.53 6.19 -25.61 -0.16 -1.69 16 22 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 23 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.35 7.51 6.78 -39.29 -0.27 7.25 16 29 H 0.07 1.20 7.82 -51.93 -0.41 0.79 16 30 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.81 7.67 -51.93 -0.40 0.41 16 37 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 LS Contribution 292.16 15.07 4.40 4.40 Total: -1.00 -28.39 292.16 -8.27 -36.66 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.82 Total: 2.57 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.97 Total: -20.45 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.14 Total: -39.68 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.39 -8.27 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.797 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds