Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47477 * 239.99733 * 2 1 3 5 5 C 1.50697 * 109.46995 * 174.99956 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46900 * 109.47233 * 119.99061 * 2 1 3 14 14 C 1.46893 * 111.00307 * 275.00478 * 13 2 1 15 15 H 1.08997 * 110.43679 * 36.08607 * 14 13 2 16 16 C 1.54889 * 110.48852 * 273.54130 * 14 13 2 17 17 C 1.54883 * 102.75484 * 203.37928 * 16 14 13 18 18 C 1.54274 * 104.19437 * 37.94547 * 17 16 14 19 19 H 1.08996 * 110.03263 * 95.67001 * 18 17 16 20 20 C 1.52995 * 110.03129 * 217.05812 * 18 17 16 21 21 C 1.53880 * 106.59412 * 336.39088 * 18 17 16 22 22 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47358 * 300.00203 * 1 2 3 24 24 H 1.08995 * 109.47224 * 60.00941 * 1 2 3 25 25 H 1.08998 * 109.47065 * 54.99382 * 4 2 1 26 26 H 1.09001 * 109.46892 * 294.99646 * 4 2 1 27 27 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 28 28 H 1.00899 * 111.00073 * 151.04462 * 13 2 1 29 29 H 1.08997 * 110.75567 * 321.70248 * 16 14 13 30 30 H 1.09007 * 110.75028 * 84.87733 * 16 14 13 31 31 H 1.08998 * 110.48768 * 156.62032 * 17 16 14 32 32 H 1.08997 * 110.48697 * 279.13691 * 17 16 14 33 33 H 1.09002 * 109.47459 * 58.54784 * 20 18 17 34 34 H 1.09003 * 109.46870 * 178.54313 * 20 18 17 35 35 H 1.09000 * 109.47600 * 298.54624 * 20 18 17 36 36 H 1.09005 * 110.03071 * 240.71215 * 21 18 17 37 37 H 1.08999 * 110.02892 * 119.29046 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1936 -2.3576 8 7 3.5771 -1.8431 -3.2961 9 14 6.0916 -1.0551 -2.4403 10 1 6.7056 -2.2034 -1.7265 11 1 6.5260 -1.0654 -3.8603 12 1 6.5225 0.2136 -1.8000 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2229 2.3469 15 1 1.2524 0.9287 2.3165 16 6 3.4351 0.9771 2.3654 17 6 3.5831 1.3773 3.8543 18 6 3.0270 0.1646 4.6291 19 1 3.8423 -0.4964 4.9230 20 6 2.2647 0.6389 5.8678 21 6 2.0729 -0.5694 3.6705 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.6054 -0.2619 -2.1369 26 1 1.7518 -1.7716 -1.2054 27 1 4.0616 -2.2505 -4.0311 28 1 2.9173 -1.1203 1.0289 29 1 4.2485 0.3191 2.0596 30 1 3.3938 1.8600 1.7274 31 1 4.6316 1.5407 4.1031 32 1 2.9972 2.2710 4.0691 33 1 1.4527 1.2996 5.5640 34 1 1.8541 -0.2230 6.3939 35 1 2.9438 1.1780 6.5283 36 1 1.0660 -0.5877 4.0875 37 1 2.4252 -1.5866 3.4995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = -53.837741 kcal Electronic energy + Delta-G solvation = -14518.481512 eV Core-core repulsion = 12293.259917 eV Total energy + Delta-G solvation = -2225.221594 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88227 -37.27476 -34.68982 -32.46869 -30.42967 -29.28444 -28.23093 -25.41371 -24.76104 -21.54887 -21.11622 -20.26106 -18.48981 -16.96323 -16.84448 -16.26546 -15.68157 -14.75893 -14.70911 -14.23115 -14.09202 -13.62192 -13.54960 -13.33182 -12.97410 -12.91666 -12.74481 -12.61781 -12.34080 -12.04451 -11.90531 -11.68355 -11.53107 -11.51759 -11.24466 -11.09809 -10.96390 -10.57673 -9.06196 -8.19442 -6.29453 1.38441 1.38907 1.49305 2.39465 3.11877 3.41382 3.78738 3.83604 4.04497 4.30991 4.43096 4.49663 4.58907 4.61303 4.70491 4.72525 4.75809 4.85654 4.97378 5.01121 5.06816 5.15158 5.21041 5.23034 5.30923 5.33491 5.38375 5.44000 5.50710 5.61562 5.64200 5.84969 6.22038 6.51496 6.70291 6.85769 7.39028 8.92395 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032193 B = 0.008211 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.546385 B = 3409.337319 C = 4035.688486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.096 3.904 3 H 0.023 0.977 4 C 0.027 3.973 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.680 5.680 14 C 0.083 3.917 15 H 0.076 0.924 16 C -0.156 4.156 17 C -0.109 4.109 18 C -0.095 4.095 19 H 0.070 0.930 20 C -0.138 4.138 21 C -0.104 4.104 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.051 0.949 25 H -0.007 1.007 26 H -0.004 1.004 27 H 0.263 0.737 28 H 0.342 0.658 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 5.669 15.530 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.013 4.013 3 H 0.041 0.959 4 C -0.011 4.011 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.312 5.312 14 C -0.028 4.028 15 H 0.094 0.906 16 C -0.195 4.195 17 C -0.147 4.147 18 C -0.114 4.114 19 H 0.088 0.912 20 C -0.195 4.195 21 C -0.143 4.143 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.069 5.316 15.529 16.544 hybrid contribution 1.679 0.327 -1.033 1.998 sum -0.390 5.643 14.496 15.561 Atomic orbital electron populations 1.21724 0.94694 1.01360 1.00808 1.21388 0.94890 0.94784 0.90258 0.95929 1.19143 0.94950 0.94660 0.92309 1.21513 0.93202 1.33783 1.08353 0.92412 1.25889 1.03257 0.94911 0.95373 1.70099 1.37494 1.36620 1.12903 0.85541 0.79959 0.78810 0.77302 1.19791 1.20943 1.19054 1.60669 1.33827 1.32299 1.04390 1.22517 0.95989 0.93087 0.91163 0.90567 1.23174 0.98412 1.00045 0.97877 1.22334 1.01201 0.98143 0.93029 1.21735 0.97742 0.96456 0.95471 0.91191 1.21836 0.99988 1.01248 0.96463 1.22171 0.99872 0.98791 0.93434 0.93267 0.92080 0.92989 0.98845 0.98562 0.92865 0.83852 0.92979 0.93016 0.91367 0.90706 0.92521 0.92259 0.91947 0.91044 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.40 71.98 0.68 -3.95 16 2 C 0.10 4.10 2.46 44.92 0.11 4.21 16 3 H 0.02 0.98 7.74 -2.39 -0.02 0.96 16 4 C 0.03 1.42 4.57 29.85 0.14 1.56 16 5 C -0.53 -29.70 8.11 25.60 0.21 -29.50 16 6 H 0.06 3.11 7.50 -2.92 -0.02 3.09 16 7 C 0.00 0.21 5.46 84.66 0.46 0.68 16 8 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 9 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.68 -26.44 6.08 -464.00 -2.82 -29.27 16 14 C 0.08 2.58 2.95 45.99 0.14 2.71 16 15 H 0.08 2.32 7.20 -2.39 -0.02 2.30 16 16 C -0.16 -4.71 6.31 31.88 0.20 -4.51 16 17 C -0.11 -2.50 6.36 31.67 0.20 -2.30 16 18 C -0.10 -2.06 3.50 -10.07 -0.04 -2.10 16 19 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 20 C -0.14 -2.36 8.84 71.98 0.64 -1.72 16 21 C -0.10 -2.74 6.19 31.32 0.19 -2.54 16 22 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.06 1.89 7.45 -2.39 -0.02 1.88 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.34 14.72 6.78 -89.69 -0.61 14.11 16 29 H 0.05 1.75 7.82 -2.39 -0.02 1.73 16 30 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.55 7.86 -2.39 -0.02 1.53 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.72 7.67 -2.38 -0.02 1.70 16 37 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 Total: -1.00 -61.07 292.16 2.81 -58.25 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.40 Total: 18.61 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 2.93 Total: -37.47 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.54 Total: -85.81 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.07 2.81 -58.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.415 kcal (2) G-P(sol) polarization free energy of solvation -61.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds