Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47442 * 239.99281 * 2 1 3 5 5 C 1.50696 * 109.46997 * 174.99707 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46900 * 109.47017 * 119.99647 * 2 1 3 14 14 C 1.46907 * 111.00200 * 275.00169 * 13 2 1 15 15 H 1.09003 * 110.01349 * 325.06291 * 14 13 2 16 16 C 1.53871 * 110.03385 * 86.45177 * 14 13 2 17 17 C 1.54267 * 106.59874 * 119.28701 * 16 14 13 18 18 C 1.54886 * 104.19341 * 23.60998 * 17 16 14 19 19 H 1.09007 * 110.75717 * 80.37505 * 18 17 16 20 20 C 1.53002 * 110.75448 * 203.55597 * 18 17 16 21 21 C 1.54271 * 110.03456 * 203.62250 * 14 13 2 22 22 H 1.08996 * 109.47663 * 300.00497 * 1 2 3 23 23 H 1.08999 * 109.47159 * 60.00509 * 1 2 3 24 24 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46767 * 55.00058 * 4 2 1 26 26 H 1.09002 * 109.47113 * 295.00398 * 4 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00553 * 151.04722 * 13 2 1 29 29 H 1.09003 * 110.03322 * 238.57148 * 16 14 13 30 30 H 1.09000 * 110.03136 * 359.95411 * 16 14 13 31 31 H 1.09001 * 110.48567 * 142.29139 * 17 16 14 32 32 H 1.08998 * 110.48653 * 264.79918 * 17 16 14 33 33 H 1.09001 * 109.47194 * 58.55368 * 20 18 17 34 34 H 1.09000 * 109.46949 * 178.54675 * 20 18 17 35 35 H 1.09002 * 109.47153 * 298.54770 * 20 18 17 36 36 H 1.08998 * 110.48460 * 335.77955 * 21 14 13 37 37 H 1.09000 * 110.48579 * 98.42187 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0861 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 5.5411 -1.1004 -2.4133 9 14 3.3013 -2.1069 -3.6963 10 1 3.1698 -3.5372 -3.3190 11 1 1.9506 -1.5110 -3.8567 12 1 4.0452 -1.9993 -4.9771 13 7 2.0196 -0.6924 1.1995 14 6 2.0823 0.2227 2.3470 15 1 2.3632 1.2215 2.0127 16 6 0.7192 0.2692 3.0593 17 6 0.9588 -0.2227 4.5017 18 6 2.4636 0.0469 4.7499 19 1 2.6319 1.0936 5.0036 20 6 3.0043 -0.8690 5.8498 21 6 3.1027 -0.2958 3.3813 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -0.2619 -2.1369 26 1 1.7516 -1.7717 -1.2054 27 1 6.0255 -1.5072 -3.1487 28 1 2.9172 -1.1205 1.0289 29 1 0.3389 1.2907 3.0715 30 1 0.0109 -0.3866 2.5531 31 1 0.3485 0.3445 5.2045 32 1 0.7415 -1.2878 4.5825 33 1 2.8548 -1.9097 5.5622 34 1 4.0687 -0.6800 5.9893 35 1 2.4748 -0.6697 6.7815 36 1 3.2340 -1.3732 3.2807 37 1 4.0571 0.2181 3.2664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = -31.466057 kcal Electronic energy + Delta-G solvation = -14489.969427 eV Core-core repulsion = 12265.717941 eV Total energy + Delta-G solvation = -2224.251485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.62390 -35.76368 -32.61874 -31.11505 -29.56918 -27.92123 -26.84452 -24.36530 -22.47516 -20.08501 -19.48397 -19.12366 -16.79913 -15.87494 -15.04282 -14.59378 -14.22390 -13.74626 -13.29977 -13.10666 -12.70639 -12.27076 -12.08711 -11.76587 -11.71951 -11.51550 -11.31393 -10.72659 -10.69356 -10.62303 -10.58241 -10.29830 -10.12225 -10.11143 -9.75476 -9.35730 -9.17716 -8.54966 -7.65839 -6.06272 -4.04415 3.31773 3.38879 3.43331 4.44978 4.74199 4.82352 4.88616 5.14069 5.33078 5.49514 5.62472 5.65567 5.76282 5.80282 5.84048 5.91800 6.03202 6.07419 6.12033 6.14506 6.25999 6.29520 6.39410 6.45045 6.47150 6.61012 6.67826 6.77897 6.84091 7.23609 7.32764 7.77498 8.01158 8.31215 8.49895 8.95988 9.56719 11.06774 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.007469 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.806718 B = 3748.160875 C = 4234.516956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.018 4.018 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.266 1.266 12 H -0.289 1.289 13 N -0.678 5.678 14 C 0.084 3.916 15 H 0.039 0.961 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.097 4.097 19 H 0.070 0.930 20 C -0.142 4.142 21 C -0.121 4.121 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.263 0.737 28 H 0.357 0.643 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 1.660 12.041 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.191 1.191 12 H -0.215 1.215 13 N -0.312 5.312 14 C -0.027 4.027 15 H 0.057 0.943 16 C -0.156 4.156 17 C -0.153 4.153 18 C -0.115 4.115 19 H 0.088 0.912 20 C -0.199 4.199 21 C -0.159 4.159 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.179 0.821 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.548 1.358 12.078 14.859 hybrid contribution 0.494 0.103 -1.067 1.180 sum -8.054 1.461 11.011 13.721 Atomic orbital electron populations 1.21952 0.96825 1.01254 0.99934 1.21441 0.93218 0.95888 0.90831 0.94842 1.19780 0.96970 0.95946 0.92825 1.21094 0.89933 1.35221 1.09791 0.91297 1.25017 0.94686 0.95737 0.97875 1.69922 1.06579 1.45294 1.32326 0.86744 0.80397 0.80551 0.81373 1.20246 1.19053 1.21542 1.60737 1.34773 1.31700 1.04032 1.22146 0.94172 0.94681 0.91691 0.94326 1.22336 0.98061 1.00264 0.94899 1.22385 0.95424 1.00968 0.96553 1.22045 0.95458 0.99196 0.94850 0.91170 1.21748 1.00542 0.99713 0.97938 1.22610 0.97805 1.01897 0.93599 0.93527 0.93612 0.92799 0.96206 0.96135 0.92759 0.82072 0.93009 0.90348 0.92597 0.91672 0.92553 0.92906 0.93106 0.90587 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.79 37.15 0.33 -2.13 16 2 C 0.10 1.96 2.59 -67.72 -0.18 1.78 16 3 H 0.03 0.72 7.45 -51.93 -0.39 0.34 16 4 C -0.02 -0.42 3.64 -27.88 -0.10 -0.52 16 5 C -0.52 -14.62 8.67 -34.44 -0.30 -14.92 16 6 H 0.07 2.07 7.73 -52.49 -0.41 1.66 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 N -0.68 -13.03 6.02 -98.57 -0.59 -13.63 16 14 C 0.08 1.37 3.24 -66.59 -0.22 1.16 16 15 H 0.04 0.68 7.46 -51.93 -0.39 0.29 16 16 C -0.12 -1.66 5.25 -25.61 -0.13 -1.79 16 17 C -0.12 -1.41 6.27 -25.07 -0.16 -1.56 16 18 C -0.10 -1.18 3.49 -88.63 -0.31 -1.49 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.14 -1.51 9.28 37.16 0.35 -1.17 16 21 C -0.12 -1.78 5.71 -25.07 -0.14 -1.93 16 22 H 0.05 0.72 5.89 -51.93 -0.31 0.42 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.36 7.64 6.83 -39.29 -0.27 7.37 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.18 6.42 -51.93 -0.33 0.85 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -28.94 284.67 -7.81 -36.75 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.65 Total: 2.93 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -0.96 Total: -20.69 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.18 Total: -40.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.94 -7.81 -36.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.286 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds