Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47442 * 239.99281 * 2 1 3 5 5 C 1.50696 * 109.46997 * 174.99707 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46900 * 109.47017 * 119.99647 * 2 1 3 14 14 C 1.46907 * 111.00200 * 275.00169 * 13 2 1 15 15 H 1.09003 * 110.01349 * 325.06291 * 14 13 2 16 16 C 1.53871 * 110.03385 * 86.45177 * 14 13 2 17 17 C 1.54267 * 106.59874 * 119.28701 * 16 14 13 18 18 C 1.54886 * 104.19341 * 23.60998 * 17 16 14 19 19 H 1.09007 * 110.75717 * 80.37505 * 18 17 16 20 20 C 1.53002 * 110.75448 * 203.55597 * 18 17 16 21 21 C 1.54271 * 110.03456 * 203.62250 * 14 13 2 22 22 H 1.08996 * 109.47663 * 300.00497 * 1 2 3 23 23 H 1.08999 * 109.47159 * 60.00509 * 1 2 3 24 24 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46767 * 55.00058 * 4 2 1 26 26 H 1.09002 * 109.47113 * 295.00398 * 4 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00553 * 151.04722 * 13 2 1 29 29 H 1.09003 * 110.03322 * 238.57148 * 16 14 13 30 30 H 1.09000 * 110.03136 * 359.95411 * 16 14 13 31 31 H 1.09001 * 110.48567 * 142.29139 * 17 16 14 32 32 H 1.08998 * 110.48653 * 264.79918 * 17 16 14 33 33 H 1.09001 * 109.47194 * 58.55368 * 20 18 17 34 34 H 1.09000 * 109.46949 * 178.54675 * 20 18 17 35 35 H 1.09002 * 109.47153 * 298.54770 * 20 18 17 36 36 H 1.08998 * 110.48460 * 335.77955 * 21 14 13 37 37 H 1.09000 * 110.48579 * 98.42187 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0861 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 5.5411 -1.1004 -2.4133 9 14 3.3013 -2.1069 -3.6963 10 1 3.1698 -3.5372 -3.3190 11 1 1.9506 -1.5110 -3.8567 12 1 4.0452 -1.9993 -4.9771 13 7 2.0196 -0.6924 1.1995 14 6 2.0823 0.2227 2.3470 15 1 2.3632 1.2215 2.0127 16 6 0.7192 0.2692 3.0593 17 6 0.9588 -0.2227 4.5017 18 6 2.4636 0.0469 4.7499 19 1 2.6319 1.0936 5.0036 20 6 3.0043 -0.8690 5.8498 21 6 3.1027 -0.2958 3.3813 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -0.2619 -2.1369 26 1 1.7516 -1.7717 -1.2054 27 1 6.0255 -1.5072 -3.1487 28 1 2.9172 -1.1205 1.0289 29 1 0.3389 1.2907 3.0715 30 1 0.0109 -0.3866 2.5531 31 1 0.3485 0.3445 5.2045 32 1 0.7415 -1.2878 4.5825 33 1 2.8548 -1.9097 5.5622 34 1 4.0687 -0.6800 5.9893 35 1 2.4748 -0.6697 6.7815 36 1 3.2340 -1.3732 3.2807 37 1 4.0571 0.2181 3.2664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = -49.129939 kcal Electronic energy + Delta-G solvation = -14490.735390 eV Core-core repulsion = 12265.717941 eV Total energy + Delta-G solvation = -2225.017449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88369 -37.27912 -34.67115 -32.56390 -30.74375 -29.77246 -28.10025 -25.56778 -24.33425 -21.42224 -20.81204 -20.47495 -18.97342 -17.06132 -16.62966 -16.19250 -16.02125 -14.96033 -14.75017 -14.34522 -14.14298 -13.82134 -13.59381 -13.49411 -13.01021 -12.88450 -12.73855 -12.43431 -12.12194 -11.80216 -11.77024 -11.68223 -11.64182 -11.39021 -11.36005 -11.11938 -11.02368 -10.77147 -9.22219 -8.29975 -6.33283 1.36213 1.36955 1.49139 2.35762 3.03757 3.42605 3.69447 3.77138 4.06785 4.25346 4.41554 4.49795 4.57409 4.61115 4.67391 4.73125 4.76697 4.81444 4.94785 5.00988 5.10597 5.12335 5.14303 5.19255 5.24027 5.27976 5.38378 5.39302 5.47327 5.54133 5.60908 5.67517 6.23038 6.45155 6.62261 6.73316 7.31172 8.86262 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.007469 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.806718 B = 3748.160875 C = 4234.516956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.097 3.903 3 H 0.015 0.985 4 C -0.013 4.013 5 C -0.525 4.525 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.249 1.249 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.077 3.923 15 H 0.021 0.979 16 C -0.112 4.112 17 C -0.109 4.109 18 C -0.090 4.090 19 H 0.078 0.922 20 C -0.139 4.139 21 C -0.122 4.122 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.265 0.735 28 H 0.339 0.661 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 1.344 12.765 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 H 0.033 0.967 4 C -0.051 4.051 5 C -0.563 4.563 6 H 0.049 0.951 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.173 1.173 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.033 4.033 15 H 0.039 0.961 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.109 4.109 19 H 0.096 0.904 20 C -0.197 4.197 21 C -0.160 4.160 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.818 1.056 12.823 16.810 hybrid contribution 1.272 0.263 -1.239 1.795 sum -9.546 1.319 11.584 15.069 Atomic orbital electron populations 1.21856 0.93710 1.01964 1.01466 1.21399 0.95593 0.94322 0.89936 0.96702 1.19725 0.94115 0.96471 0.94751 1.21344 0.92131 1.34160 1.08625 0.95068 1.25958 0.95514 0.96869 1.00631 1.70068 1.08474 1.46903 1.33538 0.85652 0.79577 0.79372 0.77966 1.19308 1.17253 1.21165 1.60882 1.33464 1.32181 1.04362 1.22307 0.96561 0.93182 0.91226 0.96092 1.22278 0.95968 1.00987 0.95808 1.22363 0.95463 1.01309 0.95543 1.22035 0.95361 1.00031 0.93501 0.90394 1.21726 1.00852 0.99015 0.98073 1.22605 0.97225 1.01003 0.95177 0.91615 0.92552 0.92424 0.95963 0.95915 0.92584 0.84155 0.91842 0.90915 0.90244 0.91648 0.92952 0.92797 0.91185 0.91550 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 8.79 71.98 0.63 -3.66 16 2 C 0.10 3.96 2.59 44.91 0.12 4.08 16 3 H 0.01 0.66 7.45 -2.39 -0.02 0.64 16 4 C -0.01 -0.62 3.64 29.85 0.11 -0.51 16 5 C -0.52 -30.13 8.67 25.60 0.22 -29.91 16 6 H 0.03 1.97 7.73 -2.91 -0.02 1.95 16 7 C 0.01 0.43 5.47 84.66 0.46 0.89 16 8 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 9 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.68 -26.27 6.02 -465.76 -2.80 -29.08 16 14 C 0.08 2.54 3.24 45.64 0.15 2.68 16 15 H 0.02 0.76 7.46 -2.39 -0.02 0.74 16 16 C -0.11 -2.95 5.25 31.32 0.16 -2.78 16 17 C -0.11 -2.36 6.27 31.67 0.20 -2.16 16 18 C -0.09 -2.04 3.49 -9.51 -0.03 -2.07 16 19 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 20 C -0.14 -2.68 9.28 71.98 0.67 -2.01 16 21 C -0.12 -3.62 5.71 31.67 0.18 -3.44 16 22 H 0.06 1.87 5.89 -2.39 -0.01 1.86 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.02 1.05 7.20 -2.38 -0.02 1.03 16 26 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 27 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.34 15.10 6.83 -89.69 -0.61 14.48 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 2.01 6.42 -2.39 -0.02 2.00 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.43 8.05 -2.39 -0.02 1.41 16 33 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.07 2.08 7.88 -2.39 -0.02 2.06 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -62.83 284.67 2.59 -60.23 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.35 Total: 20.32 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.87 Total: -38.88 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -2.51 Total: -88.44 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -62.83 2.59 -60.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.102 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds