Wall clock time and date at job start Mon Mar 30 2020 03:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46761 * 2 1 4 4 C 1.52998 * 109.47474 * 120.00281 * 2 1 3 5 5 C 1.50696 * 109.47185 * 184.99734 * 4 2 1 6 6 H 1.07998 * 119.99893 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99975 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99919 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47155 * 59.99971 * 9 7 5 11 11 H 1.48507 * 109.46937 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46816 * 299.99686 * 9 7 5 13 13 N 1.46896 * 109.46857 * 240.00530 * 2 1 3 14 14 C 1.46906 * 111.00075 * 95.86170 * 13 2 1 15 15 C 1.52998 * 109.47089 * 295.53825 * 14 13 2 16 16 C 1.52995 * 109.46994 * 175.53472 * 14 13 2 17 17 C 1.53001 * 109.46841 * 55.53686 * 14 13 2 18 18 C 1.52997 * 117.49961 * 243.62171 * 17 14 13 19 19 C 1.52998 * 117.49811 * 174.99845 * 17 14 13 20 20 H 1.09000 * 109.47622 * 54.09133 * 1 2 3 21 21 H 1.09004 * 109.47177 * 174.10019 * 1 2 3 22 22 H 1.09003 * 109.47062 * 294.09473 * 1 2 3 23 23 H 1.09004 * 109.46960 * 305.00499 * 4 2 1 24 24 H 1.08998 * 109.46911 * 64.99853 * 4 2 1 25 25 H 0.96998 * 119.99626 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00259 * 331.90709 * 13 2 1 27 27 H 1.08996 * 109.46964 * 185.23824 * 15 14 13 28 28 H 1.08996 * 109.47082 * 305.23779 * 15 14 13 29 29 H 1.09005 * 109.47015 * 65.23741 * 15 14 13 30 30 H 1.08997 * 109.47432 * 299.33938 * 16 14 13 31 31 H 1.09006 * 109.47102 * 59.34364 * 16 14 13 32 32 H 1.09004 * 109.47051 * 179.33329 * 16 14 13 33 33 H 1.08999 * 115.55202 * 29.33391 * 17 14 13 34 34 H 1.09002 * 117.50052 * 359.97438 * 18 17 14 35 35 H 1.09003 * 117.50007 * 145.02571 * 18 17 14 36 36 H 1.09000 * 117.50295 * 214.97867 * 19 17 14 37 37 H 1.09002 * 117.50007 * 0.02562 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3125 6 1 4.0789 -0.0855 0.5394 7 6 4.2305 -1.1936 2.3576 8 7 3.5766 -1.8380 3.2993 9 14 6.0922 -1.0612 2.4365 10 1 6.4845 0.3697 2.4970 11 1 6.5872 -1.7615 3.6489 12 1 6.6845 -1.6863 1.2267 13 7 2.0196 -0.6924 -1.1995 14 6 2.3271 0.2644 -2.2710 15 6 1.0411 0.9654 -2.7134 16 6 2.9370 -0.4804 -3.4601 17 6 3.3235 1.3047 -1.7553 18 6 2.8561 2.7601 -1.6921 19 6 3.8623 2.3255 -2.7595 20 1 -0.3634 0.6027 -0.8323 21 1 -0.3634 -1.0222 -0.1056 22 1 -0.3633 0.4196 0.9381 23 1 1.6054 -0.2619 2.1369 24 1 1.7517 -1.7715 1.2054 25 1 4.0611 -2.2454 4.0343 26 1 1.3566 -1.3855 -1.5129 27 1 1.2526 1.6060 -3.5695 28 1 0.2980 0.2186 -2.9930 29 1 0.6566 1.5710 -1.8926 30 1 3.8594 -0.9701 -3.1479 31 1 2.2318 -1.2295 -3.8202 32 1 3.1543 0.2278 -4.2598 33 1 4.0023 0.9594 -0.9755 34 1 1.8388 2.9767 -2.0183 35 1 3.2272 3.3727 -0.8704 36 1 4.8953 2.6521 -2.6402 37 1 3.5066 2.2562 -3.7876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:16 Heat of formation + Delta-G solvation = 15.332570 kcal Electronic energy + Delta-G solvation = -15025.796543 eV Core-core repulsion = 12803.574398 eV Total energy + Delta-G solvation = -2222.222145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19986 -35.46936 -33.02288 -31.66456 -27.92032 -27.64947 -26.62326 -23.07126 -22.90561 -21.92451 -19.60918 -18.00984 -16.39950 -15.85307 -14.97008 -14.45074 -14.06674 -13.70515 -13.03815 -12.69131 -12.52305 -12.27802 -12.04627 -11.75980 -11.64590 -11.31292 -11.08545 -10.89492 -10.78008 -10.57707 -10.43425 -10.16691 -10.10008 -9.80110 -9.42027 -9.13604 -8.82513 -8.17661 -7.44226 -5.80762 -3.77533 3.43761 3.47719 3.50767 4.16664 4.61606 4.74986 5.00494 5.25179 5.40109 5.43337 5.55572 5.60680 5.67028 5.85688 5.86408 5.88711 5.98037 6.04062 6.06612 6.13566 6.21826 6.30783 6.40715 6.47194 6.57661 6.67268 6.73384 6.85480 7.19397 7.69679 7.82820 8.15580 8.18674 8.30820 8.70461 9.27479 9.82766 11.31536 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028661 B = 0.010625 C = 0.008996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.688744 B = 2634.616933 C = 3111.896544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.071 0.929 4 C 0.034 3.966 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.653 5.653 14 C 0.141 3.859 15 C -0.183 4.183 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.191 4.191 19 C -0.185 4.185 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.013 0.987 24 H 0.015 0.985 25 H 0.256 0.744 26 H 0.329 0.671 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 6.083 -11.895 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 H 0.089 0.911 4 C -0.003 4.003 5 C -0.522 4.522 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.282 5.282 14 C 0.049 3.951 15 C -0.241 4.241 16 C -0.191 4.191 17 C -0.144 4.144 18 C -0.228 4.228 19 C -0.223 4.223 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.147 0.853 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.943 5.939 -11.499 13.273 hybrid contribution 0.095 0.271 -0.115 0.309 sum -2.848 6.210 -11.614 13.474 Atomic orbital electron populations 1.22735 0.99580 1.00877 1.01002 1.21816 0.89812 0.98544 0.92140 0.91122 1.19101 0.96040 0.95402 0.89771 1.21146 0.92010 1.32504 1.06522 0.92335 1.25000 0.97700 0.96113 0.96183 1.69958 1.35096 1.37135 1.12427 0.86763 0.86822 0.77864 0.77103 1.20652 1.21694 1.20405 1.60661 1.49397 1.14179 1.03980 1.20375 0.92172 0.91121 0.91403 1.22893 0.99033 1.01008 1.01216 1.21762 1.01476 0.99510 0.96317 1.22466 1.01475 0.89019 1.01406 1.23129 0.99329 0.98903 1.01440 1.22924 0.98709 1.05373 0.95279 0.93767 0.93274 0.92762 0.96881 0.96652 0.93410 0.85349 0.93170 0.93202 0.91638 0.91591 0.93321 0.93032 0.85727 0.88840 0.89245 0.89347 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.84 37.16 0.33 -2.81 16 2 C 0.09 1.73 1.84 -67.72 -0.12 1.61 16 3 H 0.07 1.46 5.70 -51.93 -0.30 1.16 16 4 C 0.03 0.89 4.65 -27.89 -0.13 0.76 16 5 C -0.48 -13.60 8.84 -34.44 -0.30 -13.91 16 6 H 0.06 1.61 5.64 -52.49 -0.30 1.31 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.65 -12.14 5.64 -93.05 -0.52 -12.66 16 14 C 0.14 2.20 0.81 -131.60 -0.11 2.09 16 15 C -0.18 -2.46 5.83 37.16 0.22 -2.24 16 16 C -0.13 -1.87 8.54 37.16 0.32 -1.55 16 17 C -0.13 -2.07 3.76 -90.62 -0.34 -2.41 16 18 C -0.19 -2.76 8.94 -26.73 -0.24 -3.00 16 19 C -0.19 -2.52 9.46 -26.73 -0.25 -2.77 16 20 H 0.04 0.66 5.44 -51.93 -0.28 0.38 16 21 H 0.05 0.82 8.00 -51.93 -0.42 0.40 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.33 5.69 8.23 -39.29 -0.32 5.37 16 27 H 0.05 0.61 7.61 -51.93 -0.40 0.21 16 28 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 29 H 0.06 0.92 4.64 -51.93 -0.24 0.68 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.63 7.02 -51.93 -0.36 0.27 16 33 H 0.12 2.52 6.04 -51.93 -0.31 2.20 16 34 H 0.09 1.25 5.80 -51.93 -0.30 0.95 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.06 7.14 -51.93 -0.37 0.69 16 LS Contribution 281.44 15.07 4.24 4.24 Total: -1.00 -29.76 281.44 -7.42 -37.17 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.12 Total: 3.91 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.73 Total: -22.90 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.21 Total: -39.72 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.76 -7.42 -37.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.507 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds