Wall clock time and date at job start Mon Mar 30 2020 03:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46761 * 2 1 4 4 C 1.52998 * 109.47474 * 120.00281 * 2 1 3 5 5 C 1.50696 * 109.47185 * 184.99734 * 4 2 1 6 6 H 1.07998 * 119.99893 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99975 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99919 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47155 * 59.99971 * 9 7 5 11 11 H 1.48507 * 109.46937 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46816 * 299.99686 * 9 7 5 13 13 N 1.46896 * 109.46857 * 240.00530 * 2 1 3 14 14 C 1.46906 * 111.00075 * 95.86170 * 13 2 1 15 15 C 1.52998 * 109.47089 * 295.53825 * 14 13 2 16 16 C 1.52995 * 109.46994 * 175.53472 * 14 13 2 17 17 C 1.53001 * 109.46841 * 55.53686 * 14 13 2 18 18 C 1.52997 * 117.49961 * 243.62171 * 17 14 13 19 19 C 1.52998 * 117.49811 * 174.99845 * 17 14 13 20 20 H 1.09000 * 109.47622 * 54.09133 * 1 2 3 21 21 H 1.09004 * 109.47177 * 174.10019 * 1 2 3 22 22 H 1.09003 * 109.47062 * 294.09473 * 1 2 3 23 23 H 1.09004 * 109.46960 * 305.00499 * 4 2 1 24 24 H 1.08998 * 109.46911 * 64.99853 * 4 2 1 25 25 H 0.96998 * 119.99626 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00259 * 331.90709 * 13 2 1 27 27 H 1.08996 * 109.46964 * 185.23824 * 15 14 13 28 28 H 1.08996 * 109.47082 * 305.23779 * 15 14 13 29 29 H 1.09005 * 109.47015 * 65.23741 * 15 14 13 30 30 H 1.08997 * 109.47432 * 299.33938 * 16 14 13 31 31 H 1.09006 * 109.47102 * 59.34364 * 16 14 13 32 32 H 1.09004 * 109.47051 * 179.33329 * 16 14 13 33 33 H 1.08999 * 115.55202 * 29.33391 * 17 14 13 34 34 H 1.09002 * 117.50052 * 359.97438 * 18 17 14 35 35 H 1.09003 * 117.50007 * 145.02571 * 18 17 14 36 36 H 1.09000 * 117.50295 * 214.97867 * 19 17 14 37 37 H 1.09002 * 117.50007 * 0.02562 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3125 6 1 4.0789 -0.0855 0.5394 7 6 4.2305 -1.1936 2.3576 8 7 3.5766 -1.8380 3.2993 9 14 6.0922 -1.0612 2.4365 10 1 6.4845 0.3697 2.4970 11 1 6.5872 -1.7615 3.6489 12 1 6.6845 -1.6863 1.2267 13 7 2.0196 -0.6924 -1.1995 14 6 2.3271 0.2644 -2.2710 15 6 1.0411 0.9654 -2.7134 16 6 2.9370 -0.4804 -3.4601 17 6 3.3235 1.3047 -1.7553 18 6 2.8561 2.7601 -1.6921 19 6 3.8623 2.3255 -2.7595 20 1 -0.3634 0.6027 -0.8323 21 1 -0.3634 -1.0222 -0.1056 22 1 -0.3633 0.4196 0.9381 23 1 1.6054 -0.2619 2.1369 24 1 1.7517 -1.7715 1.2054 25 1 4.0611 -2.2454 4.0343 26 1 1.3566 -1.3855 -1.5129 27 1 1.2526 1.6060 -3.5695 28 1 0.2980 0.2186 -2.9930 29 1 0.6566 1.5710 -1.8926 30 1 3.8594 -0.9701 -3.1479 31 1 2.2318 -1.2295 -3.8202 32 1 3.1543 0.2278 -4.2598 33 1 4.0023 0.9594 -0.9755 34 1 1.8388 2.9767 -2.0183 35 1 3.2272 3.3727 -0.8704 36 1 4.8953 2.6521 -2.6402 37 1 3.5066 2.2562 -3.7876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:16 Heat of formation + Delta-G solvation = -3.178887 kcal Electronic energy + Delta-G solvation = -15026.599260 eV Core-core repulsion = 12803.574398 eV Total energy + Delta-G solvation = -2223.024862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.47114 -36.94673 -34.88820 -33.32772 -29.51242 -29.21142 -27.91997 -24.96953 -24.27489 -23.02967 -21.28310 -19.29082 -18.40166 -17.24855 -16.61854 -16.18998 -15.44467 -15.15875 -14.41107 -14.32715 -13.86311 -13.54060 -13.48805 -13.34680 -13.19357 -12.90964 -12.64352 -12.46144 -12.20855 -12.16372 -11.92963 -11.86765 -11.44834 -11.15807 -10.97081 -10.90887 -10.61038 -10.42631 -8.88361 -8.06263 -6.09754 1.39702 1.42810 1.49788 2.48127 3.01159 3.25830 3.45817 3.83303 4.13139 4.20804 4.29685 4.35710 4.49507 4.50444 4.59571 4.66427 4.79659 4.83957 4.95426 4.99142 5.05290 5.08607 5.18850 5.27193 5.32819 5.37141 5.37580 5.44289 5.56268 5.61862 5.83696 5.96207 6.43724 6.63768 6.90675 7.05492 7.54957 9.06110 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028661 B = 0.010625 C = 0.008996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.688744 B = 2634.616933 C = 3111.896544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H 0.065 0.935 4 C 0.038 3.962 5 C -0.490 4.490 6 H 0.062 0.938 7 C -0.010 4.010 8 N -0.943 5.943 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.141 3.859 15 C -0.175 4.175 16 C -0.129 4.129 17 C -0.153 4.153 18 C -0.188 4.188 19 C -0.162 4.162 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.048 0.952 23 H -0.016 1.016 24 H -0.015 1.015 25 H 0.256 0.744 26 H 0.335 0.665 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 7.283 -14.227 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 H 0.084 0.916 4 C 0.000 4.000 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.205 4.205 8 N -0.586 5.586 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.305 5.305 14 C 0.050 3.950 15 C -0.234 4.234 16 C -0.186 4.186 17 C -0.172 4.172 18 C -0.224 4.224 19 C -0.199 4.199 20 H 0.093 0.907 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.002 0.998 24 H 0.003 0.997 25 H 0.065 0.935 26 H 0.154 0.846 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.947 7.152 -13.852 15.865 hybrid contribution 0.107 -0.104 0.605 0.623 sum -2.840 7.048 -13.247 15.271 Atomic orbital electron populations 1.22621 0.97001 1.01686 1.01999 1.21396 0.91747 0.97171 0.90503 0.91638 1.19016 0.95149 0.93952 0.91843 1.21544 0.93391 1.31680 1.06262 0.92003 1.25867 1.02628 0.96009 0.96000 1.70104 1.36953 1.38384 1.13170 0.85695 0.81031 0.78274 0.77155 1.19576 1.21394 1.19782 1.60464 1.49812 1.15503 1.04679 1.20447 0.93204 0.90605 0.90727 1.22774 0.97666 1.01259 1.01687 1.21739 1.00584 1.00110 0.96216 1.22292 1.02207 0.90427 1.02227 1.23189 1.00533 0.96989 1.01735 1.23005 0.98843 1.02278 0.95791 0.90734 0.93007 0.93328 0.99775 0.99679 0.93493 0.84648 0.91041 0.92154 0.92265 0.93808 0.92166 0.90681 0.90288 0.87194 0.90029 0.89009 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 8.84 71.98 0.64 -5.15 16 2 C 0.10 4.11 1.84 44.92 0.08 4.19 16 3 H 0.07 2.72 5.70 -2.39 -0.01 2.70 16 4 C 0.04 2.04 4.65 29.85 0.14 2.18 16 5 C -0.49 -28.41 8.84 25.60 0.23 -28.18 16 6 H 0.06 3.49 5.64 -2.91 -0.02 3.48 16 7 C -0.01 -0.59 5.46 84.65 0.46 -0.12 16 8 N -0.94 -59.68 13.29 21.45 0.28 -59.39 16 9 Si 0.95 46.64 29.54 68.60 2.03 48.66 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 13 N -0.67 -24.75 5.64 -448.30 -2.53 -27.27 16 14 C 0.14 4.12 0.81 3.52 0.00 4.13 16 15 C -0.18 -4.07 5.83 71.98 0.42 -3.65 16 16 C -0.13 -3.31 8.54 71.98 0.61 -2.69 16 17 C -0.15 -4.86 3.76 -10.80 -0.04 -4.90 16 18 C -0.19 -5.02 8.94 30.59 0.27 -4.74 16 19 C -0.16 -3.93 9.46 30.59 0.29 -3.65 16 20 H 0.07 2.02 5.44 -2.39 -0.01 2.01 16 21 H 0.05 1.68 8.00 -2.39 -0.02 1.66 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 23 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 24 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.33 11.29 8.23 -89.69 -0.74 10.55 16 27 H 0.07 1.38 7.61 -2.39 -0.02 1.37 16 28 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 29 H 0.06 1.46 4.64 -2.38 -0.01 1.45 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.07 1.56 7.02 -2.38 -0.02 1.54 16 33 H 0.08 3.26 6.04 -2.39 -0.01 3.24 16 34 H 0.11 2.57 5.80 -2.39 -0.01 2.56 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.11 2.19 7.14 -2.39 -0.02 2.17 16 Total: -1.00 -65.79 281.44 3.19 -62.59 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.30 Total: 18.01 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 3.11 Total: -42.60 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -2.24 Total: -86.67 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -65.79 3.19 -62.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.413 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds