Wall clock time and date at job start Mon Mar 30 2020 03:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47225 * 2 1 4 4 C 1.53007 * 109.46958 * 239.99993 * 2 1 3 5 5 C 1.50696 * 109.46836 * 175.00233 * 4 2 1 6 6 H 1.07999 * 120.00401 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99818 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99908 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99922 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46867 * 90.00336 * 9 7 5 11 11 H 1.48498 * 109.46905 * 209.99950 * 9 7 5 12 12 H 1.48499 * 109.47317 * 330.00364 * 9 7 5 13 13 N 1.46896 * 109.46858 * 120.00110 * 2 1 3 14 14 C 1.46904 * 111.00152 * 58.95537 * 13 2 1 15 15 C 1.46900 * 111.00063 * 294.99824 * 13 2 1 16 16 C 1.53003 * 109.47021 * 190.00161 * 15 13 2 17 17 C 1.53786 * 113.61503 * 85.86315 * 16 15 13 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 15 19 19 C 1.53781 * 113.61337 * 183.47109 * 16 15 13 20 20 H 1.08996 * 109.46798 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46904 * 299.99837 * 1 2 3 22 22 H 1.09004 * 109.46882 * 59.99997 * 1 2 3 23 23 H 1.08998 * 109.47049 * 295.00216 * 4 2 1 24 24 H 1.08992 * 109.47119 * 55.00145 * 4 2 1 25 25 H 0.97003 * 120.00052 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.47032 * 296.04011 * 14 13 2 27 27 H 1.09001 * 109.46996 * 56.04436 * 14 13 2 28 28 H 1.09004 * 109.46735 * 176.04441 * 14 13 2 29 29 H 1.09000 * 109.47121 * 70.00242 * 15 13 2 30 30 H 1.08997 * 109.47113 * 310.00082 * 15 13 2 31 31 H 1.09002 * 112.85017 * 314.66697 * 16 15 13 32 32 H 1.08992 * 113.61675 * 254.61398 * 17 16 15 33 33 H 1.09000 * 113.60973 * 25.51686 * 17 16 15 34 34 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 35 35 H 1.09003 * 113.61268 * 89.11946 * 18 17 16 36 36 H 1.08999 * 113.61567 * 334.48261 * 19 16 15 37 37 H 1.09000 * 113.61379 * 105.30384 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0856 -0.5396 7 6 4.2304 -1.1927 -2.3584 8 7 5.5410 -1.0995 -2.4140 9 14 3.3014 -2.1078 -3.6959 10 1 2.9398 -1.1626 -4.7826 11 1 4.1602 -3.1878 -4.2447 12 1 2.0658 -2.7003 -3.1238 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0762 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.3789 -0.5663 3.6186 17 6 3.7891 0.0075 3.8353 18 6 3.4801 -0.0204 5.3443 19 6 1.9938 0.0759 4.9617 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.7516 -1.7715 -1.2057 24 1 1.6055 -0.2618 -2.1370 25 1 6.0254 -1.5063 -3.1494 26 1 0.4420 -2.0731 1.3347 27 1 1.8167 -2.5950 0.3317 28 1 1.9617 -2.5869 2.1058 29 1 0.5722 -0.0345 2.5726 30 1 1.9298 1.0869 2.3125 31 1 2.3443 -1.6557 3.6296 32 1 4.5876 -0.6727 3.5390 33 1 3.9177 1.0129 3.4346 34 1 3.8501 0.8526 5.8821 35 1 3.7467 -0.9606 5.8272 36 1 1.6325 1.1001 4.8684 37 1 1.3427 -0.5485 5.5735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:03 Heat of formation + Delta-G solvation = -2.563988 kcal Electronic energy + Delta-G solvation = -14648.256496 eV Core-core repulsion = 12425.258298 eV Total energy + Delta-G solvation = -2222.998198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25079 -38.50015 -34.86876 -32.72961 -29.66933 -29.02497 -26.64435 -26.28417 -24.75191 -22.69117 -20.30203 -20.13318 -18.77493 -17.10329 -16.56461 -16.33967 -15.71158 -15.44184 -14.79780 -14.61937 -14.20772 -13.97698 -13.50393 -13.25055 -13.15885 -13.00833 -12.67539 -12.48229 -12.31010 -12.24316 -11.88137 -11.63173 -11.38831 -11.27842 -11.16635 -10.96198 -10.85696 -10.66887 -8.81557 -8.17054 -6.16043 1.36577 1.38427 1.49390 2.42048 3.10190 3.24788 3.81783 3.88914 3.94593 4.09591 4.19470 4.34630 4.50156 4.52352 4.56731 4.62502 4.78099 4.82893 4.92361 4.93332 4.95784 5.04419 5.12845 5.13413 5.15121 5.22145 5.26915 5.27811 5.47645 5.58909 5.70025 5.76180 6.39755 6.48433 6.58392 6.92476 7.44473 9.00557 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036864 B = 0.008224 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.373017 B = 3403.828130 C = 3862.996989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.056 0.944 4 C -0.007 4.007 5 C -0.490 4.490 6 H 0.033 0.967 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.541 5.541 14 C 0.029 3.971 15 C 0.069 3.931 16 C -0.108 4.108 17 C -0.138 4.138 18 C -0.134 4.134 19 C -0.123 4.123 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.260 0.740 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 0.606 12.374 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 H 0.075 0.925 4 C -0.044 4.044 5 C -0.528 4.528 6 H 0.052 0.948 7 C -0.199 4.199 8 N -0.601 5.601 9 Si 0.769 3.231 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.265 5.265 14 C -0.119 4.119 15 C -0.058 4.058 16 C -0.127 4.127 17 C -0.176 4.176 18 C -0.171 4.171 19 C -0.161 4.161 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.762 0.547 12.250 16.315 hybrid contribution -0.387 -0.340 -0.975 1.103 sum -11.149 0.206 11.275 15.857 Atomic orbital electron populations 1.22407 0.96532 1.02106 1.02368 1.21492 0.92333 0.96999 0.90329 0.92545 1.19676 0.94589 0.96168 0.93959 1.21298 0.92031 1.32465 1.07053 0.94847 1.25964 0.95518 0.97615 1.00779 1.70090 1.08496 1.48009 1.33545 0.85743 0.79248 0.78682 0.79406 1.19463 1.21532 1.17253 1.61934 1.60370 1.02473 1.01690 1.22348 0.97476 0.90230 1.01870 1.22120 0.97300 0.97248 0.89180 1.22590 0.96093 0.99966 0.94021 1.22915 0.97068 1.00441 0.97180 1.22848 0.96606 1.02488 0.95181 1.22867 0.96609 1.01358 0.95260 0.92350 0.91707 0.91805 0.95992 0.96393 0.93074 0.94585 0.93076 0.91365 0.94062 0.92124 0.89661 0.93718 0.91362 0.90710 0.89762 0.89664 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.31 8.50 71.98 0.61 -4.69 16 2 C 0.10 3.82 2.29 44.92 0.10 3.93 16 3 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 4 C -0.01 -0.31 3.34 29.85 0.10 -0.21 16 5 C -0.49 -28.88 9.39 25.60 0.24 -28.64 16 6 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 7 C 0.00 -0.24 5.47 84.66 0.46 0.22 16 8 N -0.96 -62.27 13.96 21.45 0.30 -61.97 16 9 Si 0.94 45.60 27.47 68.60 1.88 47.48 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 13 N -0.54 -20.47 4.47 -897.01 -4.01 -24.47 16 14 C 0.03 0.98 8.56 127.69 1.09 2.07 16 15 C 0.07 2.08 4.22 86.30 0.36 2.44 16 16 C -0.11 -2.91 3.68 -10.26 -0.04 -2.94 16 17 C -0.14 -4.00 7.65 31.21 0.24 -3.76 16 18 C -0.13 -2.85 8.09 31.21 0.25 -2.60 16 19 C -0.12 -2.50 7.64 31.12 0.24 -2.26 16 20 H 0.06 1.70 6.48 -2.39 -0.02 1.69 16 21 H 0.06 1.70 6.75 -2.39 -0.02 1.68 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.02 1.03 5.15 -2.39 -0.01 1.02 16 24 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 25 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.04 1.05 6.51 -2.39 -0.02 1.04 16 27 H 0.05 2.00 6.03 -2.39 -0.01 1.98 16 28 H 0.07 2.13 6.30 -2.38 -0.02 2.11 16 29 H 0.04 1.10 6.94 -2.39 -0.02 1.08 16 30 H 0.06 1.89 7.73 -2.39 -0.02 1.87 16 31 H 0.09 2.35 6.29 -2.39 -0.02 2.34 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.08 7.92 -2.39 -0.02 2.06 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.03 282.29 2.80 -64.23 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.96 Total: 11.17 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.67 Total: -36.44 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -3.71 Total: -86.44 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -67.03 2.80 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.661 kcal (2) G-P(sol) polarization free energy of solvation -67.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds