Wall clock time and date at job start Mon Mar 30 2020 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47478 * 2 1 4 4 C 1.53004 * 109.47172 * 239.99534 * 2 1 3 5 5 C 1.50697 * 109.47079 * 63.39785 * 4 2 1 6 6 H 1.08000 * 119.99819 * 358.23267 * 5 4 2 7 7 C 1.37875 * 119.99881 * 178.23204 * 5 4 2 8 8 N 1.31511 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99824 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47388 * 59.99766 * 9 7 5 11 11 H 1.48504 * 109.46916 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46982 * 299.99874 * 9 7 5 13 13 N 1.46902 * 109.47017 * 119.99984 * 2 1 3 14 14 C 1.46902 * 111.00112 * 177.71327 * 13 2 1 15 15 C 1.46903 * 110.99624 * 301.66303 * 13 2 1 16 16 H 1.09001 * 109.46883 * 55.00430 * 15 13 2 17 17 C 1.53000 * 109.47503 * 295.00073 * 15 13 2 18 18 C 1.53006 * 109.47099 * 175.00063 * 15 13 2 19 19 C 1.52999 * 117.49827 * 248.75189 * 18 15 13 20 20 C 1.53002 * 117.49973 * 180.09156 * 18 15 13 21 21 H 1.08998 * 109.47159 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46910 * 300.00333 * 1 2 3 23 23 H 1.09003 * 109.47022 * 60.00207 * 1 2 3 24 24 H 1.08999 * 109.47270 * 183.39914 * 4 2 1 25 25 H 1.09000 * 109.47163 * 303.39425 * 4 2 1 26 26 H 0.96999 * 120.00209 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.46876 * 176.96045 * 14 13 2 28 28 H 1.08999 * 109.46962 * 296.95949 * 14 13 2 29 29 H 1.08996 * 109.46935 * 56.95891 * 14 13 2 30 30 H 1.08999 * 109.47097 * 180.02562 * 17 15 13 31 31 H 1.08998 * 109.46983 * 59.99887 * 17 15 13 32 32 H 1.08994 * 109.46714 * 300.00308 * 17 15 13 33 33 H 1.08999 * 115.55019 * 34.41429 * 18 15 13 34 34 H 1.08999 * 117.49909 * 359.97438 * 19 18 15 35 35 H 1.09001 * 117.49837 * 145.02124 * 19 18 15 36 36 H 1.08993 * 117.49387 * 214.97784 * 20 18 15 37 37 H 1.08999 * 117.49755 * 359.97066 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6076 0.0359 -2.4783 6 1 1.0030 0.9253 -2.3796 7 6 1.9839 -0.4068 -3.7286 8 7 2.7198 -1.4901 -3.8487 9 14 1.4485 0.5323 -5.2521 10 1 1.9750 1.9194 -5.1891 11 1 1.9791 -0.1446 -6.4627 12 1 -0.0347 0.5683 -5.3156 13 7 2.0196 -0.6925 1.1995 14 6 3.4871 -0.7597 1.2064 15 6 1.5163 -0.0497 2.4207 16 1 0.4283 0.0038 2.3812 17 6 2.0928 1.3635 2.5280 18 6 1.9427 -0.8684 3.6409 19 6 0.8474 -1.6025 4.4169 20 6 1.5109 -0.3610 5.0182 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.1283 -0.7744 -1.2193 25 1 1.6279 -1.7300 -1.2801 26 1 2.9842 -1.8018 -4.7284 27 1 3.8249 -1.2290 2.1304 28 1 3.8279 -1.3480 0.3544 29 1 3.8972 0.2479 1.1395 30 1 1.7197 1.8402 3.4344 31 1 1.7891 1.9468 1.6588 32 1 3.1807 1.3100 2.5675 33 1 2.9165 -1.3524 3.5654 34 1 -0.1770 -1.5018 4.0585 35 1 1.1007 -2.5691 4.8523 36 1 2.2004 -0.5114 5.8488 37 1 0.9234 0.5564 5.0551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:32 Heat of formation + Delta-G solvation = 20.633048 kcal Electronic energy + Delta-G solvation = -14636.049653 eV Core-core repulsion = 12414.057355 eV Total energy + Delta-G solvation = -2221.992299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.96506 -36.25525 -33.15975 -31.15295 -29.45966 -27.13312 -24.90143 -24.07027 -22.68056 -22.17303 -19.60815 -18.37976 -16.72006 -15.74971 -15.08053 -14.52437 -14.23487 -13.90613 -13.55035 -13.16552 -12.27538 -12.23521 -11.92541 -11.72795 -11.56364 -11.33123 -11.28959 -10.99722 -10.81265 -10.74075 -10.33597 -10.19147 -10.14217 -9.83863 -9.74814 -9.11054 -9.02728 -8.29503 -7.53091 -5.96162 -3.97579 3.34903 3.39479 3.41566 3.89658 4.42743 4.58296 4.86878 5.06412 5.18859 5.39485 5.45894 5.54077 5.65784 5.68284 5.78335 5.95007 5.97838 5.99909 6.09047 6.17340 6.19922 6.28787 6.33772 6.39366 6.54815 6.65662 6.78325 7.00279 7.16418 7.63160 7.69785 7.88904 7.94378 8.13916 8.48757 9.08689 9.65286 11.15310 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058353 B = 0.006716 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.719021 B = 4168.148777 C = 4274.977813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.084 3.916 3 H 0.030 0.970 4 C 0.031 3.969 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.529 5.529 14 C 0.022 3.978 15 C 0.105 3.895 16 H 0.082 0.918 17 C -0.183 4.183 18 C -0.137 4.137 19 C -0.175 4.175 20 C -0.185 4.185 21 H 0.054 0.946 22 H 0.031 0.969 23 H 0.065 0.935 24 H 0.020 0.980 25 H 0.022 0.978 26 H 0.260 0.740 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.021 0.979 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 2.587 13.950 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.006 4.006 5 C -0.555 4.555 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.253 5.253 14 C -0.126 4.126 15 C -0.004 4.004 16 H 0.100 0.900 17 C -0.242 4.242 18 C -0.155 4.155 19 C -0.212 4.212 20 C -0.223 4.223 21 H 0.073 0.927 22 H 0.050 0.950 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.732 1.983 13.785 14.034 hybrid contribution 0.113 1.302 -0.877 1.574 sum -1.619 3.285 12.908 13.418 Atomic orbital electron populations 1.21786 0.95656 1.01542 0.99933 1.21852 0.94758 0.95480 0.90201 0.95250 1.19171 0.96364 0.95882 0.89168 1.21181 1.32469 1.10807 0.91088 0.92761 1.24982 0.95259 0.95093 0.98982 1.69958 1.36952 1.22909 1.23558 0.86697 0.78961 0.79987 0.82567 1.20368 1.21330 1.20268 1.62288 1.08936 1.52613 1.01417 1.22430 0.88409 0.99848 1.01952 1.21304 0.99608 0.90496 0.88996 0.89957 1.22416 1.01687 0.98485 1.01585 1.22375 0.99406 1.02372 0.91340 1.22942 0.98148 0.95865 1.04247 1.22933 1.04298 0.98417 0.96651 0.92706 0.95047 0.91639 0.96218 0.95939 0.93016 0.92541 0.90450 0.96060 0.92845 0.92234 0.92500 0.87597 0.88934 0.89235 0.89277 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.71 37.16 0.32 -2.26 16 2 C 0.08 1.78 1.79 -67.71 -0.12 1.66 16 3 H 0.03 0.64 6.52 -51.93 -0.34 0.31 16 4 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 5 C -0.52 -14.52 8.43 -34.44 -0.29 -14.81 16 6 H 0.05 1.48 6.88 -52.49 -0.36 1.12 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.53 -9.81 4.62 -226.90 -1.05 -10.85 16 14 C 0.02 0.38 8.26 60.07 0.50 0.88 16 15 C 0.10 1.60 2.29 -67.71 -0.15 1.45 16 16 H 0.08 1.29 5.76 -51.93 -0.30 0.99 16 17 C -0.18 -2.61 8.34 37.16 0.31 -2.30 16 18 C -0.14 -1.81 5.09 -90.62 -0.46 -2.27 16 19 C -0.18 -2.07 10.18 -26.69 -0.27 -2.34 16 20 C -0.19 -2.03 9.74 -26.69 -0.26 -2.29 16 21 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.03 0.52 6.27 -51.93 -0.33 0.20 16 23 H 0.06 1.34 6.80 -51.93 -0.35 0.99 16 24 H 0.02 0.54 6.25 -51.93 -0.32 0.22 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.06 0.85 5.84 -51.93 -0.30 0.55 16 28 H 0.08 1.52 6.36 -51.93 -0.33 1.19 16 29 H 0.02 0.37 6.69 -51.93 -0.35 0.02 16 30 H 0.05 0.66 7.29 -51.93 -0.38 0.28 16 31 H 0.06 0.92 6.56 -51.93 -0.34 0.58 16 32 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 33 H 0.11 1.44 6.01 -51.93 -0.31 1.12 16 34 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.95 7.61 -51.93 -0.40 0.55 16 LS Contribution 281.60 15.07 4.24 4.24 Total: -1.00 -29.28 281.60 -7.73 -37.00 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.99 Total: -0.83 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.65 Total: -20.01 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.31 Total: -37.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.28 -7.73 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.636 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds