Wall clock time and date at job start Mon Mar 30 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47478 * 2 1 4 4 C 1.53004 * 109.47172 * 239.99534 * 2 1 3 5 5 C 1.50697 * 109.47079 * 63.39785 * 4 2 1 6 6 H 1.08000 * 119.99819 * 358.23267 * 5 4 2 7 7 C 1.37875 * 119.99881 * 178.23204 * 5 4 2 8 8 N 1.31511 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99824 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47388 * 59.99766 * 9 7 5 11 11 H 1.48504 * 109.46916 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46982 * 299.99874 * 9 7 5 13 13 N 1.46902 * 109.47017 * 119.99984 * 2 1 3 14 14 C 1.46902 * 111.00112 * 177.71327 * 13 2 1 15 15 C 1.46903 * 110.99624 * 301.66303 * 13 2 1 16 16 H 1.09001 * 109.46883 * 55.00430 * 15 13 2 17 17 C 1.53000 * 109.47503 * 295.00073 * 15 13 2 18 18 C 1.53006 * 109.47099 * 175.00063 * 15 13 2 19 19 C 1.52999 * 117.49827 * 248.75189 * 18 15 13 20 20 C 1.53002 * 117.49973 * 180.09156 * 18 15 13 21 21 H 1.08998 * 109.47159 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46910 * 300.00333 * 1 2 3 23 23 H 1.09003 * 109.47022 * 60.00207 * 1 2 3 24 24 H 1.08999 * 109.47270 * 183.39914 * 4 2 1 25 25 H 1.09000 * 109.47163 * 303.39425 * 4 2 1 26 26 H 0.96999 * 120.00209 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.46876 * 176.96045 * 14 13 2 28 28 H 1.08999 * 109.46962 * 296.95949 * 14 13 2 29 29 H 1.08996 * 109.46935 * 56.95891 * 14 13 2 30 30 H 1.08999 * 109.47097 * 180.02562 * 17 15 13 31 31 H 1.08998 * 109.46983 * 59.99887 * 17 15 13 32 32 H 1.08994 * 109.46714 * 300.00308 * 17 15 13 33 33 H 1.08999 * 115.55019 * 34.41429 * 18 15 13 34 34 H 1.08999 * 117.49909 * 359.97438 * 19 18 15 35 35 H 1.09001 * 117.49837 * 145.02124 * 19 18 15 36 36 H 1.08993 * 117.49387 * 214.97784 * 20 18 15 37 37 H 1.08999 * 117.49755 * 359.97066 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6076 0.0359 -2.4783 6 1 1.0030 0.9253 -2.3796 7 6 1.9839 -0.4068 -3.7286 8 7 2.7198 -1.4901 -3.8487 9 14 1.4485 0.5323 -5.2521 10 1 1.9750 1.9194 -5.1891 11 1 1.9791 -0.1446 -6.4627 12 1 -0.0347 0.5683 -5.3156 13 7 2.0196 -0.6925 1.1995 14 6 3.4871 -0.7597 1.2064 15 6 1.5163 -0.0497 2.4207 16 1 0.4283 0.0038 2.3812 17 6 2.0928 1.3635 2.5280 18 6 1.9427 -0.8684 3.6409 19 6 0.8474 -1.6025 4.4169 20 6 1.5109 -0.3610 5.0182 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.1283 -0.7744 -1.2193 25 1 1.6279 -1.7300 -1.2801 26 1 2.9842 -1.8018 -4.7284 27 1 3.8249 -1.2290 2.1304 28 1 3.8279 -1.3480 0.3544 29 1 3.8972 0.2479 1.1395 30 1 1.7197 1.8402 3.4344 31 1 1.7891 1.9468 1.6588 32 1 3.1807 1.3100 2.5675 33 1 2.9165 -1.3524 3.5654 34 1 -0.1770 -1.5018 4.0585 35 1 1.1007 -2.5691 4.8523 36 1 2.2004 -0.5114 5.8488 37 1 0.9234 0.5564 5.0551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:31 Heat of formation + Delta-G solvation = 3.034515 kcal Electronic energy + Delta-G solvation = -14636.812783 eV Core-core repulsion = 12414.057355 eV Total energy + Delta-G solvation = -2222.755428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28106 -37.51988 -35.13040 -32.91652 -30.80129 -29.04277 -26.33810 -25.71211 -24.31576 -23.04764 -21.02264 -19.82590 -18.71483 -17.13923 -16.62305 -16.27565 -15.74712 -15.17953 -14.96422 -14.55890 -14.15775 -13.61310 -13.38260 -13.19093 -13.10476 -12.87797 -12.75849 -12.63378 -12.47555 -12.23930 -12.02382 -11.66255 -11.42540 -11.28972 -11.09660 -10.87162 -10.79874 -10.50230 -9.01190 -8.16876 -6.26595 1.40330 1.43281 1.50937 2.41578 2.87586 3.16526 3.26930 3.79920 4.05539 4.19317 4.24524 4.32062 4.41260 4.48528 4.57699 4.60141 4.70712 4.72862 4.82350 4.88122 4.95128 5.08896 5.12249 5.13902 5.25405 5.29910 5.34847 5.38759 5.49873 5.52769 5.74598 5.82868 6.16353 6.42522 6.45519 6.89705 7.41508 8.95259 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058353 B = 0.006716 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.719021 B = 4168.148777 C = 4274.977813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.095 3.905 3 H 0.024 0.976 4 C 0.040 3.960 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.540 5.540 14 C 0.027 3.973 15 C 0.106 3.894 16 H 0.081 0.919 17 C -0.177 4.177 18 C -0.156 4.156 19 C -0.178 4.178 20 C -0.163 4.163 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.053 0.947 24 H -0.006 1.006 25 H -0.013 1.013 26 H 0.262 0.738 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 3.855 15.309 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.013 4.013 3 H 0.042 0.958 4 C 0.003 3.997 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.264 5.264 14 C -0.121 4.121 15 C -0.002 4.002 16 H 0.099 0.901 17 C -0.236 4.236 18 C -0.175 4.175 19 C -0.214 4.214 20 C -0.200 4.200 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.006 0.994 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.575 3.260 15.167 15.725 hybrid contribution 0.393 0.865 -1.232 1.556 sum -2.182 4.125 13.934 14.695 Atomic orbital electron populations 1.21687 0.94261 1.01255 1.00916 1.21538 0.95763 0.94438 0.89512 0.95773 1.18996 0.94615 0.94475 0.91617 1.21584 1.32392 1.11102 0.92078 0.92061 1.25930 0.95186 0.95992 1.02591 1.70106 1.38225 1.24654 1.24430 0.85550 0.78951 0.78730 0.78110 1.19269 1.20999 1.19136 1.62205 1.09354 1.53020 1.01840 1.22358 0.88133 0.99600 1.01995 1.21358 0.99402 0.91329 0.88112 0.90071 1.22360 1.01555 0.97621 1.02077 1.22263 0.99762 1.03701 0.91730 1.23026 0.97599 0.96909 1.03912 1.23018 1.03592 0.98193 0.95200 0.93581 0.91824 0.92824 0.98750 0.99416 0.92920 0.89771 0.93566 0.95956 0.90331 0.93803 0.92687 0.88064 0.89095 0.88374 0.87603 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 8.71 71.98 0.63 -4.16 16 2 C 0.10 4.08 1.79 44.92 0.08 4.16 16 3 H 0.02 1.07 6.52 -2.39 -0.02 1.05 16 4 C 0.04 2.19 4.26 29.85 0.13 2.32 16 5 C -0.53 -30.53 8.43 25.60 0.22 -30.31 16 6 H 0.06 3.35 6.88 -2.91 -0.02 3.33 16 7 C 0.00 0.03 5.46 84.65 0.46 0.50 16 8 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 9 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.54 -20.00 4.62 -871.78 -4.03 -24.03 16 14 C 0.03 0.97 8.26 127.69 1.06 2.02 16 15 C 0.11 3.06 2.29 44.92 0.10 3.16 16 16 H 0.08 2.35 5.76 -2.39 -0.01 2.34 16 17 C -0.18 -4.69 8.34 71.98 0.60 -4.09 16 18 C -0.16 -3.77 5.09 -10.79 -0.05 -3.83 16 19 C -0.18 -3.73 10.18 30.62 0.31 -3.42 16 20 C -0.16 -2.97 9.74 30.62 0.30 -2.67 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.06 2.03 6.27 -2.39 -0.01 2.01 16 23 H 0.05 2.18 6.80 -2.39 -0.02 2.16 16 24 H -0.01 -0.34 6.25 -2.39 -0.01 -0.35 16 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.08 2.49 5.84 -2.39 -0.01 2.47 16 28 H 0.05 1.91 6.36 -2.39 -0.02 1.89 16 29 H 0.02 0.77 6.69 -2.39 -0.02 0.76 16 30 H 0.08 1.67 7.29 -2.39 -0.02 1.65 16 31 H 0.04 1.29 6.56 -2.39 -0.02 1.27 16 32 H 0.05 1.47 6.54 -2.39 -0.02 1.45 16 33 H 0.10 2.54 6.01 -2.39 -0.01 2.53 16 34 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.67 7.61 -2.39 -0.02 1.65 16 Total: -1.00 -63.79 281.60 3.14 -60.65 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.03 Total: 10.49 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: 3.83 Total: -36.33 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.74 Total: -81.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -63.79 3.14 -60.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.683 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds