Wall clock time and date at job start Mon Mar 30 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47683 * 2 1 4 4 C 1.53005 * 109.46954 * 120.00404 * 2 1 3 5 5 C 1.50700 * 109.46870 * 184.99894 * 4 2 1 6 6 H 1.08000 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99802 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00028 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00247 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47203 * 89.99922 * 9 7 5 11 11 H 1.48502 * 109.47418 * 210.00270 * 9 7 5 12 12 H 1.48508 * 109.46949 * 330.00157 * 9 7 5 13 13 N 1.46905 * 109.47121 * 239.99754 * 2 1 3 14 14 C 1.46897 * 111.00029 * 306.04850 * 13 2 1 15 15 C 1.46898 * 110.99698 * 70.00007 * 13 2 1 16 16 H 1.09000 * 109.47661 * 293.89896 * 15 13 2 17 17 C 1.53004 * 109.47210 * 53.89639 * 15 13 2 18 18 C 1.52998 * 109.47189 * 173.89407 * 15 13 2 19 19 C 1.53001 * 117.50126 * 244.97180 * 18 15 13 20 20 C 1.52995 * 117.50258 * 176.34768 * 18 15 13 21 21 H 1.08997 * 109.47032 * 59.99893 * 1 2 3 22 22 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46755 * 300.00299 * 1 2 3 24 24 H 1.09007 * 109.46622 * 304.99226 * 4 2 1 25 25 H 1.08994 * 109.47272 * 64.99588 * 4 2 1 26 26 H 0.96999 * 120.00018 * 179.97438 * 8 7 5 27 27 H 1.08992 * 109.47413 * 189.22269 * 14 13 2 28 28 H 1.09000 * 109.46987 * 69.22691 * 14 13 2 29 29 H 1.08994 * 109.47395 * 309.22973 * 14 13 2 30 30 H 1.08991 * 109.47586 * 179.97438 * 17 15 13 31 31 H 1.09000 * 109.47140 * 300.00571 * 17 15 13 32 32 H 1.09009 * 109.46788 * 59.99504 * 17 15 13 33 33 H 1.09006 * 115.54680 * 30.67924 * 18 15 13 34 34 H 1.08999 * 117.49487 * 359.97438 * 19 18 15 35 35 H 1.08996 * 117.49867 * 145.01769 * 19 18 15 36 36 H 1.09001 * 117.50259 * 214.98307 * 20 18 15 37 37 H 1.09005 * 117.49901 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1929 2.3583 8 7 5.5411 -1.1005 2.4134 9 14 3.3014 -2.1068 3.6965 10 1 3.1696 -3.5370 3.3193 11 1 4.0451 -1.9992 4.9774 12 1 1.9506 -1.5108 3.8569 13 7 2.0197 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0971 -2.4090 16 1 0.6769 0.1632 -2.5699 17 6 2.3301 1.5037 -2.2374 18 6 2.4083 -0.5794 -3.6147 19 6 3.5408 0.1720 -4.3173 20 6 2.1727 0.0467 -4.9906 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 6.0253 -1.5067 3.1492 27 1 1.9323 -2.5857 -2.1060 28 1 0.3712 -1.9513 -1.5331 29 1 1.5648 -2.5659 -0.3646 30 1 2.1326 2.0895 -3.1350 31 1 1.8633 1.9857 -1.3784 32 1 3.4062 1.4377 -2.0765 33 1 2.4814 -1.6657 -3.5619 34 1 3.8187 1.1486 -3.9208 35 1 4.3594 -0.4198 -4.7267 36 1 2.0912 -0.6276 -5.8432 37 1 1.5504 0.9404 -5.0371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:35 Heat of formation + Delta-G solvation = 31.078259 kcal Electronic energy + Delta-G solvation = -14871.620440 eV Core-core repulsion = 12650.081080 eV Total energy + Delta-G solvation = -2221.539360 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.02894 -36.45708 -32.73924 -31.04497 -29.72838 -27.77696 -24.78884 -24.27321 -22.34964 -22.13606 -19.38724 -18.10123 -16.57253 -16.28999 -15.45202 -14.50219 -14.11979 -13.87912 -13.49818 -12.99002 -12.50559 -12.10399 -12.01947 -11.85642 -11.62346 -11.50936 -11.27669 -10.97629 -10.87816 -10.78222 -10.40856 -10.13645 -9.84673 -9.65162 -9.59838 -9.46498 -8.97065 -8.38544 -7.41547 -5.87351 -3.80880 3.37480 3.45117 3.47545 3.99018 4.54249 4.57476 4.96640 5.16750 5.25143 5.45785 5.52548 5.57463 5.65267 5.76024 5.79154 5.86608 5.89028 5.96855 6.03286 6.05872 6.16481 6.28159 6.31018 6.44005 6.51132 6.57337 6.60804 6.65505 6.88265 7.18105 7.39505 7.86324 7.90922 8.03073 8.76622 9.26059 9.75864 11.26760 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037203 B = 0.008847 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.439439 B = 3164.086401 C = 3466.698948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.089 3.911 3 H 0.082 0.918 4 C -0.007 4.007 5 C -0.488 4.488 6 H 0.079 0.921 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.505 5.505 14 C 0.025 3.975 15 C 0.111 3.889 16 H 0.034 0.966 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.176 4.176 20 C -0.189 4.189 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.017 0.983 25 H 0.012 0.988 26 H 0.259 0.741 27 H 0.058 0.942 28 H 0.014 0.986 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 1.943 -10.669 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.019 4.019 3 H 0.100 0.900 4 C -0.045 4.045 5 C -0.526 4.526 6 H 0.097 0.903 7 C -0.139 4.139 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.228 5.228 14 C -0.123 4.123 15 C 0.002 3.998 16 H 0.051 0.949 17 C -0.207 4.207 18 C -0.155 4.155 19 C -0.213 4.213 20 C -0.226 4.226 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.449 1.844 -10.506 13.607 hybrid contribution -1.257 -0.589 0.694 1.552 sum -9.705 1.255 -9.812 13.858 Atomic orbital electron populations 1.22560 0.99904 1.01337 1.00817 1.21816 0.89749 0.99119 0.91169 0.89991 1.19705 0.98014 0.95024 0.91726 1.21064 0.89405 1.33698 1.08443 0.90268 1.25012 0.94659 0.96380 0.97808 1.69914 1.06384 1.46324 1.32275 0.86914 0.80413 0.80616 0.82062 1.20636 1.21660 1.19351 1.62054 1.58271 1.01766 1.00739 1.22388 0.95477 0.91814 1.02608 1.21065 0.96002 0.93235 0.89475 0.94858 1.22037 1.02892 0.95103 1.00631 1.22347 1.02347 0.99258 0.91579 1.23058 0.91671 1.02795 1.03768 1.22948 1.00620 1.03035 0.96025 0.93860 0.92900 0.92639 0.96527 0.96952 0.93136 0.92360 0.96780 0.90658 0.93167 0.92240 0.90912 0.87627 0.88105 0.89344 0.89413 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.45 37.16 0.31 -2.78 16 2 C 0.09 1.77 1.97 -67.71 -0.13 1.64 16 3 H 0.08 1.67 5.65 -51.93 -0.29 1.38 16 4 C -0.01 -0.17 3.45 -27.88 -0.10 -0.27 16 5 C -0.49 -13.93 9.39 -34.44 -0.32 -14.25 16 6 H 0.08 2.48 7.99 -52.49 -0.42 2.06 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 9 Si 0.87 22.09 27.47 -169.99 -4.67 17.43 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 N -0.51 -9.61 4.29 -226.91 -0.97 -10.59 16 14 C 0.03 0.44 8.26 60.06 0.50 0.94 16 15 C 0.11 1.76 2.10 -67.71 -0.14 1.62 16 16 H 0.03 0.52 6.88 -51.93 -0.36 0.16 16 17 C -0.15 -2.28 7.37 37.16 0.27 -2.00 16 18 C -0.14 -1.99 5.67 -90.62 -0.51 -2.50 16 19 C -0.18 -2.36 9.52 -26.73 -0.25 -2.61 16 20 C -0.19 -2.25 9.93 -26.73 -0.27 -2.51 16 21 H 0.04 0.64 6.82 -51.93 -0.35 0.29 16 22 H 0.05 0.85 6.54 -51.93 -0.34 0.52 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.30 5.61 -51.93 -0.29 0.00 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.06 0.94 6.32 -51.93 -0.33 0.61 16 28 H 0.01 0.22 6.77 -51.93 -0.35 -0.13 16 29 H 0.07 1.44 6.02 -51.93 -0.31 1.13 16 30 H 0.05 0.64 7.15 -51.93 -0.37 0.27 16 31 H 0.06 0.92 6.11 -51.93 -0.32 0.60 16 32 H 0.07 1.23 7.16 -51.92 -0.37 0.86 16 33 H 0.11 1.59 6.21 -51.93 -0.32 1.26 16 34 H 0.10 1.35 5.82 -51.93 -0.30 1.05 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.99 7.84 -51.93 -0.41 0.59 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -30.47 276.88 -7.39 -37.86 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.95 Total: -0.03 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -0.74 Total: -21.04 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.20 Total: -38.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.47 -7.39 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.935 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds