Wall clock time and date at job start Mon Mar 30 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47683 * 2 1 4 4 C 1.53005 * 109.46954 * 120.00404 * 2 1 3 5 5 C 1.50700 * 109.46870 * 184.99894 * 4 2 1 6 6 H 1.08000 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99802 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00028 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00247 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47203 * 89.99922 * 9 7 5 11 11 H 1.48502 * 109.47418 * 210.00270 * 9 7 5 12 12 H 1.48508 * 109.46949 * 330.00157 * 9 7 5 13 13 N 1.46905 * 109.47121 * 239.99754 * 2 1 3 14 14 C 1.46897 * 111.00029 * 306.04850 * 13 2 1 15 15 C 1.46898 * 110.99698 * 70.00007 * 13 2 1 16 16 H 1.09000 * 109.47661 * 293.89896 * 15 13 2 17 17 C 1.53004 * 109.47210 * 53.89639 * 15 13 2 18 18 C 1.52998 * 109.47189 * 173.89407 * 15 13 2 19 19 C 1.53001 * 117.50126 * 244.97180 * 18 15 13 20 20 C 1.52995 * 117.50258 * 176.34768 * 18 15 13 21 21 H 1.08997 * 109.47032 * 59.99893 * 1 2 3 22 22 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46755 * 300.00299 * 1 2 3 24 24 H 1.09007 * 109.46622 * 304.99226 * 4 2 1 25 25 H 1.08994 * 109.47272 * 64.99588 * 4 2 1 26 26 H 0.96999 * 120.00018 * 179.97438 * 8 7 5 27 27 H 1.08992 * 109.47413 * 189.22269 * 14 13 2 28 28 H 1.09000 * 109.46987 * 69.22691 * 14 13 2 29 29 H 1.08994 * 109.47395 * 309.22973 * 14 13 2 30 30 H 1.08991 * 109.47586 * 179.97438 * 17 15 13 31 31 H 1.09000 * 109.47140 * 300.00571 * 17 15 13 32 32 H 1.09009 * 109.46788 * 59.99504 * 17 15 13 33 33 H 1.09006 * 115.54680 * 30.67924 * 18 15 13 34 34 H 1.08999 * 117.49487 * 359.97438 * 19 18 15 35 35 H 1.08996 * 117.49867 * 145.01769 * 19 18 15 36 36 H 1.09001 * 117.50259 * 214.98307 * 20 18 15 37 37 H 1.09005 * 117.49901 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1929 2.3583 8 7 5.5411 -1.1005 2.4134 9 14 3.3014 -2.1068 3.6965 10 1 3.1696 -3.5370 3.3193 11 1 4.0451 -1.9992 4.9774 12 1 1.9506 -1.5108 3.8569 13 7 2.0197 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0971 -2.4090 16 1 0.6769 0.1632 -2.5699 17 6 2.3301 1.5037 -2.2374 18 6 2.4083 -0.5794 -3.6147 19 6 3.5408 0.1720 -4.3173 20 6 2.1727 0.0467 -4.9906 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 6.0253 -1.5067 3.1492 27 1 1.9323 -2.5857 -2.1060 28 1 0.3712 -1.9513 -1.5331 29 1 1.5648 -2.5659 -0.3646 30 1 2.1326 2.0895 -3.1350 31 1 1.8633 1.9857 -1.3784 32 1 3.4062 1.4377 -2.0765 33 1 2.4814 -1.6657 -3.5619 34 1 3.8187 1.1486 -3.9208 35 1 4.3594 -0.4198 -4.7267 36 1 2.0912 -0.6276 -5.8432 37 1 1.5504 0.9404 -5.0371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:35 Heat of formation + Delta-G solvation = 11.898513 kcal Electronic energy + Delta-G solvation = -14872.452137 eV Core-core repulsion = 12650.081080 eV Total energy + Delta-G solvation = -2222.371056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33423 -37.73821 -34.81955 -32.69491 -31.05919 -29.57480 -26.19095 -25.58532 -24.22606 -23.12917 -20.83185 -19.46480 -18.76311 -17.62355 -16.76927 -16.25823 -15.62897 -15.19658 -14.89042 -14.63295 -14.19226 -13.88248 -13.45415 -13.25908 -13.09874 -12.85199 -12.63109 -12.49267 -12.19965 -12.09961 -12.01612 -11.71900 -11.37616 -11.32369 -11.11486 -10.96813 -10.72848 -10.64288 -8.79644 -8.15645 -6.13987 1.36965 1.38519 1.49485 2.42878 2.88018 3.16767 3.32403 3.83147 4.06007 4.15636 4.22558 4.34720 4.38507 4.43923 4.53775 4.57362 4.66938 4.80059 4.81990 4.87817 4.92844 5.02641 5.11323 5.15464 5.16364 5.23663 5.29933 5.33058 5.38809 5.43652 5.63101 5.77905 6.41959 6.51435 6.61185 6.94447 7.46276 9.01912 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037203 B = 0.008847 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.439439 B = 3164.086401 C = 3466.698948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.486 4.486 6 H 0.035 0.965 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.536 5.536 14 C 0.029 3.971 15 C 0.114 3.886 16 H 0.047 0.953 17 C -0.145 4.145 18 C -0.159 4.159 19 C -0.189 4.189 20 C -0.158 4.158 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.660 1.730 -11.408 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 H 0.087 0.913 4 C -0.043 4.043 5 C -0.525 4.525 6 H 0.053 0.947 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.171 1.171 13 N -0.260 5.260 14 C -0.119 4.119 15 C 0.006 3.994 16 H 0.065 0.935 17 C -0.202 4.202 18 C -0.177 4.177 19 C -0.225 4.225 20 C -0.195 4.195 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.016 1.637 -11.263 15.839 hybrid contribution -0.384 -0.474 0.835 1.034 sum -11.400 1.164 -10.428 15.494 Atomic orbital electron populations 1.22413 0.96741 1.02125 1.02216 1.21602 0.92175 0.97806 0.90031 0.91260 1.19657 0.94640 0.95851 0.94110 1.21296 0.91984 1.32280 1.06905 0.94678 1.25944 0.95492 0.97701 1.00755 1.70088 1.08433 1.48143 1.33521 0.85772 0.79733 0.79330 0.78420 1.19818 1.21507 1.17120 1.61955 1.59579 1.02800 1.01691 1.22333 0.96916 0.90960 1.01687 1.21096 0.96843 0.92882 0.88555 0.93491 1.21996 1.00952 0.95514 1.01707 1.22320 1.03834 0.98874 0.92706 1.23109 0.92557 1.02484 1.04399 1.23022 0.98739 1.03110 0.94630 0.91864 0.92337 0.91883 0.96294 0.96511 0.93136 0.91622 0.94507 0.92851 0.90405 0.92809 0.93639 0.88458 0.88569 0.89260 0.87653 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.32 8.45 71.98 0.61 -4.71 16 2 C 0.09 3.58 1.97 44.92 0.09 3.67 16 3 H 0.07 2.84 5.65 -2.39 -0.01 2.83 16 4 C -0.01 -0.24 3.45 29.85 0.10 -0.14 16 5 C -0.49 -28.49 9.39 25.60 0.24 -28.25 16 6 H 0.03 2.31 7.99 -2.91 -0.02 2.28 16 7 C 0.00 -0.26 5.47 84.66 0.46 0.20 16 8 N -0.96 -62.19 13.96 21.45 0.30 -61.89 16 9 Si 0.94 45.66 27.47 68.60 1.88 47.54 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 13 N -0.54 -20.12 4.29 -871.81 -3.74 -23.87 16 14 C 0.03 0.97 8.26 127.69 1.05 2.03 16 15 C 0.11 3.45 2.10 44.92 0.09 3.55 16 16 H 0.05 1.30 6.88 -2.39 -0.02 1.29 16 17 C -0.14 -4.30 7.37 71.98 0.53 -3.77 16 18 C -0.16 -4.38 5.67 -10.80 -0.06 -4.44 16 19 C -0.19 -4.85 9.52 30.59 0.29 -4.56 16 20 C -0.16 -3.28 9.93 30.59 0.30 -2.98 16 21 H 0.06 1.66 6.82 -2.39 -0.02 1.65 16 22 H 0.06 1.70 6.54 -2.39 -0.02 1.69 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 25 H 0.02 0.78 5.61 -2.39 -0.01 0.77 16 26 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 27 H 0.07 2.07 6.32 -2.39 -0.02 2.05 16 28 H 0.04 1.05 6.77 -2.39 -0.02 1.04 16 29 H 0.05 2.00 6.02 -2.39 -0.01 1.98 16 30 H 0.08 1.83 7.15 -2.39 -0.02 1.82 16 31 H 0.05 1.63 6.11 -2.39 -0.01 1.62 16 32 H 0.04 1.58 7.16 -2.38 -0.02 1.56 16 33 H 0.10 2.83 6.21 -2.38 -0.01 2.81 16 34 H 0.10 2.54 5.82 -2.39 -0.01 2.53 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 1.88 7.84 -2.38 -0.02 1.86 16 Total: -1.00 -66.86 276.88 3.13 -63.73 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.98 Total: 13.90 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 3.72 Total: -39.41 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.44 Total: -85.76 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.54 kcal Total: -66.86 3.13 -63.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.628 kcal (2) G-P(sol) polarization free energy of solvation -66.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds