Wall clock time and date at job start Mon Mar 30 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47160 * 2 1 4 4 C 1.53003 * 109.47056 * 119.99583 * 2 1 3 5 5 C 1.50697 * 109.47229 * 182.92804 * 4 2 1 6 6 H 1.08000 * 119.99915 * 355.14227 * 5 4 2 7 7 C 1.37871 * 120.00156 * 175.13623 * 5 4 2 8 8 N 1.31519 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00154 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47114 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47155 * 120.00218 * 9 7 5 12 12 H 1.48502 * 109.46954 * 240.00004 * 9 7 5 13 13 N 1.46893 * 109.47400 * 239.99912 * 2 1 3 14 14 C 1.46902 * 110.99993 * 72.78965 * 13 2 1 15 15 C 1.46901 * 111.00086 * 308.83702 * 13 2 1 16 16 C 1.52998 * 109.47259 * 190.00167 * 15 13 2 17 17 H 1.08998 * 115.55877 * 330.69978 * 16 15 13 18 18 C 1.52997 * 117.50141 * 116.39366 * 16 15 13 19 19 C 1.52999 * 60.03629 * 107.49929 * 18 16 15 20 20 H 1.08995 * 117.50102 * 107.47220 * 19 18 16 21 21 C 1.53002 * 117.50053 * 252.47997 * 19 18 16 22 22 H 1.09003 * 109.47219 * 300.00270 * 1 2 3 23 23 H 1.08999 * 109.46762 * 60.00230 * 1 2 3 24 24 H 1.08994 * 109.47042 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47389 * 302.93176 * 4 2 1 26 26 H 1.09004 * 109.46863 * 62.92729 * 4 2 1 27 27 H 0.96994 * 119.99937 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47238 * 289.96184 * 14 13 2 29 29 H 1.08999 * 109.47120 * 49.96542 * 14 13 2 30 30 H 1.09002 * 109.46760 * 169.96179 * 14 13 2 31 31 H 1.09002 * 109.47197 * 69.99800 * 15 13 2 32 32 H 1.09006 * 109.46955 * 310.00211 * 15 13 2 33 33 H 1.09000 * 117.49687 * 359.97438 * 18 16 15 34 34 H 1.08999 * 117.49792 * 215.00401 * 18 16 15 35 35 H 1.09002 * 109.46714 * 8.60210 * 21 19 18 36 36 H 1.08994 * 109.47185 * 128.60388 * 21 19 18 37 37 H 1.08998 * 109.46858 * 248.60791 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5452 -0.6587 1.2862 6 1 4.0881 -0.2245 0.4596 7 6 4.2294 -1.1556 2.3751 8 7 3.5684 -1.6846 3.3816 9 14 6.0952 -1.0774 2.4211 10 1 6.5948 -0.4408 1.1761 11 1 6.5284 -0.2776 3.5950 12 1 6.6457 -2.4524 2.5287 13 7 2.0197 -0.6925 -1.1993 14 6 1.8127 0.1262 -2.4014 15 6 1.3844 -2.0091 -1.3434 16 6 2.0909 -2.7983 -2.4474 17 1 2.5372 -2.1997 -3.2414 18 6 2.8107 -4.0870 -2.0447 19 6 1.5014 -4.1574 -2.8332 20 1 1.5600 -4.4521 -3.8809 21 6 0.2506 -4.6236 -2.0855 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6344 -0.2385 2.1385 26 1 1.7201 -1.7629 1.2235 27 1 4.0498 -2.0339 4.1478 28 1 0.7474 0.1796 -2.6255 29 1 2.1982 1.1308 -2.2276 30 1 2.3389 -0.3244 -3.2429 31 1 0.3342 -1.8792 -1.6047 32 1 1.4598 -2.5538 -0.4022 33 1 2.7812 -4.3723 -0.9931 34 1 3.7307 -4.3359 -2.5735 35 1 0.4703 -4.6973 -1.0204 36 1 -0.5547 -3.9058 -2.2415 37 1 -0.0549 -5.5999 -2.4618 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:54 Heat of formation + Delta-G solvation = 15.758334 kcal Electronic energy + Delta-G solvation = -14738.099450 eV Core-core repulsion = 12515.895768 eV Total energy + Delta-G solvation = -2222.203682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.59373 -36.57399 -32.80945 -30.70358 -28.39395 -27.27326 -26.91593 -24.25874 -22.53218 -21.06538 -19.48331 -18.43638 -16.16009 -15.59687 -15.03412 -14.59646 -14.09509 -13.74363 -13.12719 -12.98285 -12.67710 -12.43859 -11.99060 -11.83169 -11.60919 -11.35355 -11.16327 -11.07664 -10.93261 -10.66588 -10.53435 -10.31294 -9.95127 -9.47428 -9.36956 -9.13000 -8.90253 -8.21872 -7.38254 -5.84576 -3.81563 3.40794 3.48167 3.54428 4.07014 4.59977 4.68276 5.01098 5.25294 5.29823 5.50601 5.52502 5.68614 5.79619 5.83876 5.89367 5.97695 5.99170 6.06132 6.07490 6.15124 6.22136 6.23509 6.30863 6.38569 6.54047 6.57775 6.71404 6.79090 7.03459 7.60585 7.73142 7.97701 8.08295 8.17619 8.64626 9.25548 9.80031 11.27568 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.009957 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.628908 B = 2811.553974 C = 3253.204592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.513 5.513 14 C 0.024 3.976 15 C 0.090 3.910 16 C -0.135 4.135 17 H 0.101 0.899 18 C -0.167 4.167 19 C -0.166 4.166 20 H 0.096 0.904 21 C -0.121 4.121 22 H 0.055 0.945 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.021 0.979 26 H 0.014 0.986 27 H 0.256 0.744 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -1.846 -11.006 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.081 0.919 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.236 5.236 14 C -0.125 4.125 15 C -0.038 4.038 16 C -0.153 4.153 17 H 0.119 0.881 18 C -0.204 4.204 19 C -0.184 4.184 20 H 0.114 0.886 21 C -0.178 4.178 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.129 -1.986 -10.780 12.102 hybrid contribution 0.240 0.105 -0.023 0.263 sum -4.888 -1.881 -10.803 12.006 Atomic orbital electron populations 1.22526 0.99828 1.01252 1.00607 1.21958 0.90002 0.98266 0.92047 0.91281 1.19191 0.96479 0.95012 0.89969 1.21231 0.91559 1.37213 1.02424 0.91941 1.25011 0.97937 0.96100 0.95949 1.69977 1.34947 1.41849 1.07877 0.86592 0.86634 0.77429 0.77676 1.19774 1.21461 1.21379 1.62042 1.57670 1.02129 1.01770 1.22396 0.98008 0.98002 0.94065 1.21642 0.93709 0.90597 0.97841 1.22367 1.02841 0.89325 1.00768 0.88137 1.23092 0.94674 1.01821 1.00781 1.22381 0.95223 1.01619 0.99226 0.88624 1.21311 0.96122 1.00167 1.00187 0.92582 0.94238 0.92934 0.96082 0.96822 0.93467 0.96780 0.92165 0.92341 0.95558 0.89662 0.88401 0.89487 0.92168 0.92616 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.41 37.16 0.31 -2.91 16 2 C 0.09 1.77 2.27 -67.71 -0.15 1.62 16 3 H 0.07 1.46 7.87 -51.93 -0.41 1.05 16 4 C 0.03 0.79 4.40 -27.88 -0.12 0.66 16 5 C -0.49 -13.79 8.80 -34.44 -0.30 -14.10 16 6 H 0.06 1.79 7.69 -52.49 -0.40 1.39 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 N -0.51 -10.00 4.31 -234.88 -1.01 -11.01 16 14 C 0.02 0.38 8.97 60.07 0.54 0.92 16 15 C 0.09 1.61 3.18 -3.82 -0.01 1.60 16 16 C -0.13 -2.14 5.70 -90.58 -0.52 -2.66 16 17 H 0.10 1.56 6.46 -51.93 -0.34 1.22 16 18 C -0.17 -2.60 9.82 -26.73 -0.26 -2.87 16 19 C -0.17 -2.25 6.41 -90.58 -0.58 -2.83 16 20 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.12 -1.53 9.20 37.16 0.34 -1.19 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.62 7.02 -51.93 -0.36 0.25 16 24 H 0.05 0.92 6.54 -51.93 -0.34 0.58 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.01 0.37 6.36 -51.93 -0.33 0.04 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.01 0.21 7.09 -51.93 -0.37 -0.16 16 29 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 30 H 0.06 0.86 6.54 -51.93 -0.34 0.52 16 31 H 0.03 0.45 6.40 -51.93 -0.33 0.11 16 32 H 0.09 1.76 5.91 -51.93 -0.31 1.45 16 33 H 0.10 1.68 7.94 -51.93 -0.41 1.27 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 36 H 0.05 0.68 7.84 -51.93 -0.41 0.27 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 289.54 15.07 4.36 4.36 Total: -1.00 -29.87 289.54 -8.20 -38.08 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.42 Total: -1.57 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -0.85 Total: -20.42 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.27 Total: -37.79 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.87 -8.20 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.836 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds